Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0473
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          26   0.36 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 293 PIYCALQNRLKRNKP---CFKMASERPCFFDDISLANDSDNIKLMTLA 159
           PIY  L   +K N P     KM+S  PC FD+ ++ N+      M  A
Sbjct: 210 PIYYNL-TMVKLNWPKKRVTKMSSINPCIFDNATIVNNGPEAAKMAKA 256


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 69  ATSRAFSKVCQCLNSRYIPE 10
           A++  FSK C C    Y+ E
Sbjct: 82  ASTTGFSKECYCCRESYLKE 101


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 69  ATSRAFSKVCQCLNSRYIPE 10
           A++  FSK C C    Y+ E
Sbjct: 82  ASTTGFSKECYCCRESYLKE 101


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 27  NLDIDKLLKKPEK*RPMIDYLKFFSLK 107
           N+D DK +   E   P +D++  + ++
Sbjct: 108 NIDWDKCILSSESYNPQVDFVADYKIE 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,978
Number of Sequences: 438
Number of extensions: 3191
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)