Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0472
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    27   3.5  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   6.1  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.1  

>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 492 LKLFCLKLVSSILTEPPKITIVKK*KFEIKLCISQFI 382
           L L   K +SSIL  PP  ++    K+ IKLC  + I
Sbjct: 257 LNLLQCKYISSILVGPPPASLFASSKY-IKLCFDEQI 292


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 543 CANIESLLIVKYNGFSSLFCQTRVHEVRTRLTMT 644
           CAN+  L  V +N F  L  + R H V  +  +T
Sbjct: 847 CANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVT 880


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 543  CANIESLLIVKYNGFSSLFCQTRVHEV 623
            CAN+  L    YN F  L  + R H V
Sbjct: 1010 CANVVILYDCSYNPFDDLQAEDRAHRV 1036


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,653
Number of Sequences: 5004
Number of extensions: 56771
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)