Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0472
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0067 + 13144002-13144203,13144471-13144529,13144638-131447...    31   1.2  
06_03_0391 - 20287755-20288084,20288174-20288414,20288519-202888...    31   1.2  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    29   4.8  

>12_02_0067 +
           13144002-13144203,13144471-13144529,13144638-13144713,
           13144802-13144873,13144969-13145056,13145365-13145601,
           13145705-13145910,13145946-13146122,13146220-13146251,
           13146330-13146432,13146547-13146815,13148029-13148175,
           13148272-13148412,13148509-13148595,13148841-13148931,
           13149093-13149192,13149292-13149352,13149442-13149663,
           13149756-13149872,13149972-13150061,13150168-13150344
          Length = 917

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -2

Query: 308 CRGAALKISEQNRKIHFLLLSHMYKTRSLTASLIRRQRRTSFSIL 174
           C+      +E     H LLLSH    R+    L RR R  SFSIL
Sbjct: 214 CQPGGNSATEPYIAAHNLLLSHAAAVRTYRDKLFRRGRLASFSIL 258


>06_03_0391 -
           20287755-20288084,20288174-20288414,20288519-20288844,
           20288954-20289097,20289260-20289380,20289645-20289733,
           20289821-20289891,20290165-20290309,20290390-20290479,
           20290991-20291239
          Length = 601

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 299 AALKISEQNRKIHFLLLSHMYKTRSLTASLIRRQRRTSFSILKFCTL*QKKGKLI 135
           A L I +QN  +HFL   +     S+   L R + R +F  LKF    Q+ G L+
Sbjct: 273 AVLPILQQNGVVHFLGFGNRLGFDSVPVHLQRLRCRCNFHALKFVPEIQRAGSLL 327


>02_05_0046 -
           25398412-25398594,25399022-25399060,25399896-25400360,
           25400758-25400816,25400920-25401748,25402554-25402898,
           25402973-25403435,25403537-25403640,25403692-25403901,
           25404933-25405088,25405774-25406052,25406237-25406986,
           25407141-25407232,25407977-25408361,25408672-25408752,
           25409196-25409354,25409399-25409506,25409604-25409666,
           25409764-25409835,25409932-25410366
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 180 RERCPPLTSNE*GR*TSSFIHMTKQEKMYFSI 275
           R RCPPLTS++  R     +HM K++K    +
Sbjct: 444 RRRCPPLTSDD--RRHRRILHMLKKKKFVLKV 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,982,539
Number of Sequences: 37544
Number of extensions: 291920
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)