Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0472
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)              29   4.9  
SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)                    28   8.6  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 478

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 210 HSTSKEDIVLDFKILYIMTKKREINISL*Y 121
           HS S++D V  F ILY  T +  +N+S  Y
Sbjct: 395 HSYSQDDYVAQFLILYAKTHQDSVNLSQIY 424


>SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)
          Length = 550

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = +1

Query: 307 QFY*--LKTLNYKYSYLINKIKLQIHFYKLRYT*FYL-EFLFFDN 432
           QFY   L  +  +YSY+ ++ +L+++FY L +  F+L +F  ++N
Sbjct: 500 QFYDISLSLILCRYSYVHDETRLELNFYYLSFCAFFLPDFKQYEN 544


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 612 VHEVRTRLTMTXLVHYTLRHXHGEVCSRCAV 704
           ++E  T++TMT L H+     H EV   CAV
Sbjct: 529 INEKNTKVTMTVLKHFINVTNHPEVRMACAV 559


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,491,964
Number of Sequences: 59808
Number of extensions: 377360
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)