Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0472
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81517-4|CAB04211.1|  350|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>Z81517-4|CAB04211.1|  350|Caenorhabditis elegans Hypothetical
           protein F28B1.4 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 53  ISNQDALVAASENEDRCECFQVIYYREILI 142
           +S     +A   NE  CEC ++I YR+++I
Sbjct: 257 LSENSLYIALQSNEGACECPKIIPYRDVVI 286


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -2

Query: 233 TRSLTASLIRRQR-RTSFSILKFCTL*QKKG-KLIFLCNILPENIRTCLRFRK 81
           T S +AS ++R R R  +SI+  C +   +    +FL ++ P +I TC  F K
Sbjct: 464 TLSSSASSVKRVRNRLGWSIIAVCLIAAAQIIPYVFLLDVAPHDIETCKGFYK 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,388
Number of Sequences: 27780
Number of extensions: 317673
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)