Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0472
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23160.1 68415.m02767 F-box family protein contains Pfam PF00...    28   5.3  
At2g03930.2 68415.m00359 hypothetical protein                          28   5.3  

>At2g23160.1 68415.m02767 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 395

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 209 IRRQRRTSFSILKFCTL*QKKGKLIFLCNILPENIRTCLRFRKRQPVHLD 60
           IR ++   F I +FC L   KGKL  +      N ++CL +RK+  V  D
Sbjct: 241 IRSEKFIFFEIERFCRLINYKGKLAVIYFEDDVNYQSCL-YRKKNYVEPD 289


>At2g03930.2 68415.m00359 hypothetical protein
          Length = 164

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 328 LNYKYSYLINKIKLQ-IHFYKL 390
           +N KY YL+ KIK+Q I F+K+
Sbjct: 140 INLKYQYLLTKIKIQNIKFHKI 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,696
Number of Sequences: 28952
Number of extensions: 269413
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)