Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0470
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.66 
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   3.5  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 604  KLALRRRFVSIWREXSQXWVHXSXI 678
            K+ +  +F++IW+E  Q W H S I
Sbjct: 1524 KMKIIVKFLNIWKEIQQIWTHLSAI 1548


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 325 AFRCLSNVVSQEVGAL--NVAVFAWTAPLLHQYRSLIWNNP*SFE 197
           A + L+N V  +V     N   F W+ P+ + ++SL+W    SF+
Sbjct: 814 AVKLLANSVLNDVHPRVPNFRYFIWSVPMNNWFQSLVWLYTLSFD 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,547
Number of Sequences: 5004
Number of extensions: 43189
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)