Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0470
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   2.8  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   3.8  
SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)                       28   6.6  
SB_38695| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 105 GFEENLMRNWVCLVEHESSRDTSKTN 182
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 98  ETWLRRKSHEELGMSGRAREQP*HVQDEHEP 190
           E WL RK H E  +S   RE+   V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)
          Length = 246

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 33  VVLCVGSEAKTFTRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYG 212
           VV   G  + + +   +   L++ GF  +L  + V  +   +S    K    RNG K   
Sbjct: 41  VVKVTGGRSNSSSHEDVAQSLKRSGFLYDLTESSV--IPTATSATYRKFRLKRNGMKKTE 98

Query: 213 LFQINDRYWCS 245
            F+   R WCS
Sbjct: 99  FFKYLRRKWCS 109


>SB_38695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 195 GSKDYGLFQINDRYWCSKGAVQAK 266
           G+ DYG+  ++ R W  +GAVQ K
Sbjct: 88  GTGDYGIRGVHCRLWNQEGAVQGK 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,815
Number of Sequences: 59808
Number of extensions: 338119
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)