Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0470
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             29   4.1  
At1g44900.1 68414.m05144 DNA replication licensing factor, putat...    29   4.1  
At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SD...    28   5.4  
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD...    28   5.4  
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD...    28   5.4  
At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein si...    27   9.4  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 68  HEMRSRA*AEETWLRRKSHEELGMSGRAR 154
           H     A  EE WLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
           similar to DNA replication licensing factor MCM2 from
           {Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 928

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 546 LTARALFQLHTNXLNFYLKTRTKHTGLFRGDRIESLAEVH 427
           ++ + +F LH N  N + K   + T L   D+I ++ ++H
Sbjct: 280 VSEKVIFDLHPNYKNIHTKIYVRVTNLPVNDQIRNIRQIH 319


>At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 287

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 120 LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGAV 257
           L+  +VCL+  ++ R  S  N +       GL +    Y CSKG V
Sbjct: 143 LISKYVCLLMRDAERGGSVINVSSISGLHRGLLRGGLAYACSKGGV 188


>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 276

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 120 LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGAV 257
           L+  +VCL+  ++ R  S  N +       GL +    Y CSKG V
Sbjct: 134 LISKYVCLLMRDAKRGGSVINVSSISGLHRGLLRGGLAYACSKGGV 179


>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 277

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 120 LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGAV 257
           L+  +VCL+  ++ R  S  N +       GL +    Y CSKG V
Sbjct: 135 LISKYVCLLMRDAKRGGSVINVSSISGLHRGLLRGGLAYACSKGGV 180


>At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein
           similar to SP|P09379 GTPase-activating protein GYP7
           (Fragment) {Yarrowia lipolytica}; contains Pfam profile
           PF00566: TBC domain
          Length = 424

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 341 KRHRFDAWYGWKNHCQGSLPDISS 412
           + HR + +Y WK  C+  +P + S
Sbjct: 100 RNHRREQYYAWKEECKNMVPLVGS 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,787,689
Number of Sequences: 28952
Number of extensions: 227957
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)