Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0469
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    27   2.9  
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    27   2.9  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   6.6  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.8  

>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 265 HFQQLRQISLGNEFKYKMEMEIKDENLRNSVPFVRQ 372
           H  QLR+  L N F+ K+E  I   + +  +PF+ Q
Sbjct: 54  HGPQLREYQLKNAFRPKLEGVISSLDNKLPIPFMNQ 89


>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 283 DVVVESDDEFLERILFVFAATLC-GYVFRYRIVVSGHQSTLGST*SCEGSA 134
           D + E D   L+   F F AT+C G+      V  G   T  +T SC G +
Sbjct: 52  DFLQEEDRNLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGS 102


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 337 ENLRNSVPFVRQLSTDSVKTKTEYDNEDGTP 429
           E + +++P++  L   + K  +EYDNE   P
Sbjct: 224 EYVNDAIPYILSLYRQNRKISSEYDNEAFPP 254


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +1

Query: 97  GAFETNALSVNNQHFPRNFMWI 162
           G ++ +++S++N  FP +FM++
Sbjct: 17  GVYKISSISLSNSFFPHSFMFV 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,128
Number of Sequences: 5004
Number of extensions: 56622
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)