Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0469
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0153 - 1276090-1276182,1276416-1276630,1276710-1276806,127...    29   4.0  
04_03_0653 - 18429736-18431379                                         29   5.2  
03_05_0501 - 24944533-24945507                                         29   5.2  
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312...    28   6.9  
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940...    28   6.9  

>11_01_0153 -
           1276090-1276182,1276416-1276630,1276710-1276806,
           1276880-1277077,1277266-1277328,1277628-1277687,
           1277826-1277928,1280045-1280154
          Length = 312

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 427 PYKSTTQKLFLWTQLLAAFAVSVGSMNADFHLGHI-TCCANNEYNFGHNKGXIHG 588
           PY + +    L   LL+ FA +  +   D H+ +  TC  + + N  HN   IHG
Sbjct: 125 PYIAMSDDDKLEKSLLSGFAENCNNGFGDNHITYTDTCSVSEDLNKHHNMDSIHG 179


>04_03_0653 - 18429736-18431379
          Length = 547

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 171 VPWDPHEVAREVLVVDAESVGFEGTRAYLG 82
           +PW P E AR   + +   VGF  TR  +G
Sbjct: 428 IPWPPAESARHERLAELAVVGFAETRGQVG 457


>03_05_0501 - 24944533-24945507
          Length = 324

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 468 ASCSVCSFCRFNECGFSSGSHHL 536
           A+C+VC    F  CG  SGSH L
Sbjct: 274 AACAVCGGAWFVVCGACSGSHRL 296


>03_05_0388 +
           23726957-23727418,23730016-23730262,23731072-23731220,
           23731313-23731597,23731665-23731889,23734251-23734445
          Length = 520

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +1

Query: 337 ENLRNSVPFVRQLSTDSVKTKTEYDNEDGTPYKSTTQKLF 456
           +N+    P+++Q+S  S + + +Y+ E   PY+  +   +
Sbjct: 44  DNVEEGNPYIQQVSLYSEEPENQYNEEPSNPYQEESDNAY 83


>01_07_0131 +
           41292800-41293400,41293522-41293649,41293759-41294019,
           41294154-41294416,41294507-41294831
          Length = 525

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 78  VVPNTPGCLRNQRS--QRQQPALPSQLHVDPRVLWCPLTTIRYRN 206
           V+ N  G L N R+  + Q P   SQ   D RVL+C   T+ + +
Sbjct: 278 VIINRTGILNNWRTSFKPQDPVQASQFQSDGRVLYCLELTMNFNH 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,122,153
Number of Sequences: 37544
Number of extensions: 389630
Number of successful extensions: 910
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)