Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0469
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045)                   34   0.11 
SB_59212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045)
          Length = 261

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +1

Query: 319 EMEIKDENLRNSVPFVRQLSTDSVKTKTEYDNEDGTPYKSTTQKLFLWTQLLAAFAVSVG 498
           EMEI+ EN   ++  +R+ +T    TKT Y +E  T  K   + L LW+ + A    S+G
Sbjct: 134 EMEIRHENYSKALELIRK-ATAVPSTKTNYYDESETVQKRVHKSLKLWS-MYADLEESLG 191

Query: 499 SMNA 510
           +  +
Sbjct: 192 TFQS 195


>SB_59212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 80 HECGITALHPLVRDGFVRFHPG 15
          +E G+ AL PLV D FVRF  G
Sbjct: 29 NESGLYALGPLVGDNFVRFGMG 50


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 280 RQISLGNEFKYKMEMEIKDENLR 348
           RQ+ LG E   K+++++K+EN R
Sbjct: 95  RQVELGEEVLQKVQLKLKEENAR 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,367,969
Number of Sequences: 59808
Number of extensions: 463463
Number of successful extensions: 1839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1838
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)