Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0469
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47890.1 68414.m05333 disease resistance family protein conta...    32   0.47 
At5g42000.1 68418.m05113 ORMDL family protein contains Pfam doma...    29   2.5  
At5g39770.1 68418.m04817 repair endonuclease family protein cont...    28   5.8  
At4g13235.1 68417.m02058 hypothetical protein late embryogenesis...    28   5.8  

>At1g47890.1 68414.m05333 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1019

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
 Frame = +1

Query: 322 MEIKDENLRNSVPFVRQLSTDSVKTKTEYDNEDGTPYKSTTQKLFLWTQLLAAFAVSVGS 501
           +++ + NL  S+P+  +    S+      +N        +  ++F+    L +  VS   
Sbjct: 640 LDLSNNNLNGSLPWCLETLMSSLSDLDLRNNS----LSGSLPEIFMNATKLRSLDVSHNR 695

Query: 502 MNADFHLGHITCCANNEY-NFGHNKGXIHGWGLMPYSCRSLWRLVIL---GEKHYGHXHH 669
           M      G +T C++ E  N G N+  I+   + P+   SL +L +L     K +G  H+
Sbjct: 696 MEGKLP-GSLTGCSSLEVLNVGSNR--IND--MFPFELNSLQKLQVLVLHSNKFHGTLHN 750

Query: 670 IDGVSYAY 693
           +DGV + +
Sbjct: 751 VDGVWFGF 758


>At5g42000.1 68418.m05113 ORMDL family protein contains Pfam domain
           PF04061: ORMDL family
          Length = 154

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/96 (26%), Positives = 36/96 (37%)
 Frame = +1

Query: 361 FVRQLSTDSVKTKTEYDNEDGTPYKSTTQKLFLWTQLLAAFAVSVGSMNADFHLGHITCC 540
           +VR L T  V   TE+    G          F W  +L+ F  S G      HL H T  
Sbjct: 2   YVRALPTTDVNRNTEWFTYPGVWTTYILILFFSWLLVLSVFHCSPGIAWTIVHLAHFTV- 60

Query: 541 ANNEYNFGHNKGXIHGWGLMPYSCRSLWRLVILGEK 648
               ++F   KG   G     Y+  + W  +  G++
Sbjct: 61  --TYHSFHWKKGTPFGDDQGVYNRLTWWEQIDNGKQ 94


>At5g39770.1 68418.m04817 repair endonuclease family protein contains
            Pfam PF02732 : ERCC4 domain; similar to MUS81
            endonuclease (GI:16755674) [Mus musculus]; similar to
            repair endonuclease (TIGR:At5g41150) [Arabidopsis
            thaliana]
          Length = 1242

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 171  VPWDPHEVAREVLVVDAESVGFEGTRAYLGPRVRYNRSSSPCA 43
            +P  P   A+E L  D   V  EG+RA      +  RSSSPC+
Sbjct: 919  IPAGPSSRAQEFLATDTGQVDLEGSRA------KKFRSSSPCS 955


>At4g13235.1 68417.m02058 hypothetical protein late embryogenesis
           abundant protein -Picea glauca,PID:g1161171
          Length = 129

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 477 CKKLRP*KQFLSCRFV--RCSILVIVFRLSFNAV 382
           C+KL P   +LSC +V   C +L+++ + S+  V
Sbjct: 74  CEKLSPQASYLSCVYVIMTCDLLILLIQFSYYLV 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,987,708
Number of Sequences: 28952
Number of extensions: 309993
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)