Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0468
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 31 0.21
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.5
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 2.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.5
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.6
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 26 6.1
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 25 8.0
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 8.0
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 30.7 bits (66), Expect = 0.21
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +2
Query: 323 ASSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSR-STVATSPSQET 499
+SSSS P+ S TS S + +S+ + SS+ + T+++S+ STV +PS +
Sbjct: 202 SSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSS 261
Query: 500 VATIGARPRR*KLHAANPTSNGNPSS 577
+T P A N + N +S
Sbjct: 262 SSTSSEVPSSTAALALNASKASNHTS 287
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 458 SSRSTVATSPSQETVATIGARPRR*KLHAANPTSNGNPSSYLEVRRXIMIEE 613
SS + ++ SP++ + A P +L A T + NP +VR IM +E
Sbjct: 571 SSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADE 622
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 458 SSRSTVATSPSQETVATIGARPRR*KLHAANPTSNGNPSSYLEVRRXIMIEE 613
SS + ++ SP++ + A P +L A T + NP +VR IM +E
Sbjct: 571 SSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADE 622
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 161 VYQKLITAVTSLVQFLRTQLNEFGIINTTPDL 256
+Y+ ++TSL+Q +QL+++ +I PDL
Sbjct: 222 IYEIFKYSITSLLQIPVSQLSQYSVIFIVPDL 253
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 361 ILALLRAYRPRSINPLDEVPSKLRAVVV 444
I +L +Y P+ INP +E+P R + +
Sbjct: 9 IYKVLYSYEPQEINPGEEIPENEREISI 36
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3
Query: 224 RSAESSRTGREM*QL*STSDRPHAAPSHHRISGYGVSSERRSGSLRPDL 78
RS ES +TG Q STS+ P IS +S + SG L P L
Sbjct: 88 RSIESEQTGTLSKQTTSTSEAPQDLKIWKNISN---ASNQNSGKLNPQL 133
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 205 LEDSAERIWHYQHDARLTNFFAAPSSIKS 291
L+ ERI H + L+ FA PS++KS
Sbjct: 206 LQSLQERISHCERSVSLSPSFAPPSNVKS 234
>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 551 PTSNGNPSSYLEVRRXIMI 607
PT NG PS YL+VR + +
Sbjct: 178 PTVNGTPSIYLDVRPKLSV 196
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 14 ILEVTQILYSNIQKLLPTQXSRDLAEAIHSYVQK 115
I+E+T +++S+ KL + SRD + S++++
Sbjct: 31 IVEITDLVFSSESKLTQRKESRDSKTFVPSFLEE 64
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 229 KFVQLSPQELDERCDSCDQLLIDHTQLLLIIAFLVTE 119
K + + + +DER D C + L+ H Q ++TE
Sbjct: 64 KNILILKKRMDERVDHCFETLVQHLQQTYPDICIITE 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,120
Number of Sequences: 5004
Number of extensions: 47513
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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