Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0468
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887...    30   1.6  
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646...    30   1.6  
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970...    30   2.1  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    29   4.8  
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323...    28   6.3  
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867...    28   8.4  
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597...    28   8.4  

>05_05_0114 -
           22488172-22488279,22488414-22488511,22488616-22488784,
           22489310-22489377,22490485-22490521,22490660-22490741,
           22490845-22490903
          Length = 206

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 250 RLTNFFAAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILAL 372
           RL    A PSS+ S+ ++AG+ TW+  + +++     IL L
Sbjct: 26  RLLPCLAPPSSVHSSYAVAGDLTWAILETIHAAIGHQILTL 66


>04_03_0660 +
           18463011-18463322,18463424-18463516,18464500-18464607,
           18464892-18465044,18465256-18465354,18465443-18465571,
           18465987-18466166,18466208-18466246,18466247-18466363,
           18466445-18466609
          Length = 464

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 331 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 441
           ++L +GDF   L LL++Y P +I+ L  + +KLR  +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462


>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
            28797173-28797234,28797316-28797460,28797542-28797961,
            28798041-28798090,28798163-28798349,28798426-28798680,
            28798785-28798953,28799044-28799177,28799291-28799446,
            28799534-28799719,28799798-28799962,28800074-28800190,
            28800553-28800762,28800850-28801049,28801135-28801405,
            28801481-28801547,28801644-28801942,28802425-28802991
          Length = 1487

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 446  TVNTSSRSTVATSPSQETVATIGARPRR*KLHAANPTSNGNPSSYLEVR 592
            T +TS+  T ++SPS  +   + ARP+R         + GN  SY EV+
Sbjct: 1417 TASTSTEETESSSPSGSSAEPVAARPKR--------QTRGNKKSYQEVQ 1457


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 709 VKP*PTXHTICXXRNDTS-FMIGXLXSVQNSCHFFNHD 599
           V+P  T    C   ND S  M   L  VQ  CHF N+D
Sbjct: 370 VEPGDTIVDFCCGANDFSRLMKEKLDKVQKKCHFKNYD 407


>01_06_1732 -
           39531577-39531726,39531809-39531925,39532175-39532354,
           39532704-39532802,39533571-39533675,39534046-39534138,
           39534243-39534326
          Length = 275

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 331 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 429
           K+L +GDF   L LL+ Y P +I+ L  V +KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274


>11_04_0307 +
           16185405-16185713,16185847-16185942,16186626-16186730,
           16186938-16187090,16188395-16188478,16188566-16188694,
           16188986-16189165,16189555-16189677,16189678-16189794,
           16189889-16190053
          Length = 486

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 331 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVVN 447
           ++L +GDF   + LL+ Y P +I+ L  + ++LR  V +
Sbjct: 448 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 486


>03_02_0663 +
           10256898-10258915,10259162-10259248,10259463-10259724,
           10259802-10260111,10260535-10260645,10260861-10261090
          Length = 1005

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -2

Query: 474 TVEREDVLTVHNNSAELRRHFV*WVDATRSVGSEKGQDVREITGVQLLEEAPRCLSSKRR 295
           T  R++ L     S +++R F  +     ++G         ++ VQLLE A  C S   R
Sbjct: 727 TGHRDEALAKAEQSIKIQRSFEAFFLKAYALGDSSLDTESSLSVVQLLEHANSCASDNLR 786

Query: 294 SG 289
            G
Sbjct: 787 KG 788


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,030
Number of Sequences: 37544
Number of extensions: 325590
Number of successful extensions: 1022
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)