Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0468
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         31   1.2  
SB_29615| Best HMM Match : OstA (HMM E-Value=6.2)                      30   1.6  
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)                   29   2.8  
SB_24793| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)                 29   3.7  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        29   3.7  

>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 451 QHIFTFDGRHLTFPGNCRY 507
           +H  TFDGRH+ F G C Y
Sbjct: 222 RHYRTFDGRHIDFIGKCSY 240


>SB_29615| Best HMM Match : OstA (HMM E-Value=6.2)
          Length = 343

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 202 LDERCDSCDQLLIDHTQLLLIIAFLVTEFLLNVGVDRFGQISAXLRWQQFLDI 44
           LD   D CDQ+L+++    +IIA  ++EF     + +   +    R ++ LD+
Sbjct: 48  LDFMSDKCDQILLENPNAKIIIAVNISEFTRQHALHQ--MVKVPTRGERILDV 98


>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
          Length = 731

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 202 LDERCDSCDQLLIDHTQLLLIIAFLVTEFLLNVGVD 95
           LD   D+CDQ+L+++    +IIA  + +  +N  VD
Sbjct: 299 LDFMSDTCDQILLENPNAKIIIAGDINQLNINKDVD 334


>SB_24793| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
          Length = 216

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +2

Query: 8   EKILEVTQILYSNIQKLLPTQXSRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITAV 187
           E  ++V  +++     ++ T       +  H + Q  + N +   +KE R+    L+  V
Sbjct: 74  ETTIKVAAVIWITCLMVITTSYLAIFLKVKHQHHQHNMSNLQRSIQKERRLAVTLLLVTV 133

Query: 188 TSLVQFL 208
           TSLV +L
Sbjct: 134 TSLVSWL 140


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 450 STHLHVRRSPPHLPRKLSLRLAHDH 524
           +TH+ V   PP LP  + L +AHDH
Sbjct: 94  ATHI-VHACPPPLPEAICLHIAHDH 117


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 30  RYCTAISRNCCQRKXAEI-WPKRSTPTFRR-NSVTRNAMMRRSCV 158
           RY T + +N   R+  +  WP  S P FRR NS+ +N   R  C+
Sbjct: 719 RYFTNLKKNLPSRRPLDTYWPSAS-PLFRRTNSILKNMYHRWRCM 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,941,753
Number of Sequences: 59808
Number of extensions: 379497
Number of successful extensions: 1174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)