Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0468
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +2

Query: 338 CTPVISLTSW---PFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSP 487
           C P I +  W   P  +  +     H TKC LS  L    V T + +T  T+P
Sbjct: 88  CPPAICVDQWDNCPLYKLINQCTRYHKTKCPLSCGLCTGNVTTPATTTSTTTP 140


>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 400 NPLDEVPSKLRAVVVNG---QHIFTFDGRHLTFPGNCRY 507
           +PLD  P K+ + ++N    ++  TFDG    F  NCR+
Sbjct: 77  DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRF 115


>AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical
           protein Y43F8A.2 protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 38  YSNIQKLLPTQXSRDLAEAIHSYVQKKLRNQKCDDEKELRVV 163
           Y +I KLL     +D AE  + YV+  L+ QK DD+  L V+
Sbjct: 151 YPHISKLL--YKPKDGAEESYFYVKSSLQFQKSDDKHVLNVL 190


>Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical
           protein C04B4.1 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 352 FPDILALLRAYRPRSINP-LDEVPSKLRAVVVNGQHIFTFDGRH 480
           F  I+A L  Y   S+   + +  +KLR  +    H+F  DG H
Sbjct: 188 FCSIIAQLSLYAENSLKKYIGDSTTKLRVFIERRTHLFRVDGEH 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,369
Number of Sequences: 27780
Number of extensions: 273870
Number of successful extensions: 838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)