Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0468
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.7  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   8.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 157 CGLSEVDHSCHISRPVLEDSAERIWHYQHDARLTNFF 267
           C    +D S + +  VL D+ +++   ++DA+  NFF
Sbjct: 348 CNDLSIDRSTN-TMYVLSDNFQQLLFSKYDAKKRNFF 383


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +2

Query: 77  RDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLI 178
           +DL + +H+++Q   +  K  +EK  R + +  +
Sbjct: 49  KDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFL 82


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +2

Query: 77  RDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLI 178
           +DL + +H+++Q   +  K  +EK  R + +  +
Sbjct: 32  KDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFL 65


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 226 FVQLSPQELDERCDSC 179
           +V   P+ L E CD C
Sbjct: 8   YVSTMPKSLKEPCDGC 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,721
Number of Sequences: 438
Number of extensions: 3130
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)