Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0468
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59120.1 68416.m06591 DC1 domain-containing protein contains ...    28   5.3  
At5g08030.1 68418.m00934 glycerophosphoryl diester phosphodieste...    28   7.0  
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo...    28   7.0  
At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase...    28   7.0  
At5g61090.1 68418.m07665 proline-rich family protein contains pr...    27   9.2  
At5g42770.1 68418.m05209 Maf family protein contains Pfam domain...    27   9.2  
At5g37310.1 68418.m04481 endomembrane protein 70, putative multi...    27   9.2  
At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    27   9.2  

>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 602

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 411 RSAV*APRCCCERSTHLHVRRSPPHLPRKLSL-RLAHDHVD 530
           +S V  PR   + + H H     PHLP K+SL R+ + HVD
Sbjct: 211 KSCVDLPRVI-KITRHPHRLSHTPHLPTKVSLCRVCYKHVD 250


>At5g08030.1 68418.m00934 glycerophosphoryl diester
           phosphodiesterase family protein similar to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 372

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 253 LTNFFAAPSSIKSAPSLAGEATWSFFKQLYSGDFPDI 363
           +T FF    ++K   +L  +  + F  Q Y+G FP I
Sbjct: 121 MTGFFTVDFTLKELKTLGAKQRYPFRDQQYNGKFPII 157


>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 449

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 331 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLR 432
           ++L +GDF   L LL+ Y P +I+ +  V  KLR
Sbjct: 414 RRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLR 447


>At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase C
           family protein contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 613

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 241 VDNAKFVQLSPQELDERCDSCDQLLIDHTQLLLI 140
           VD  + + LS QELD  C S  Q ++  TQ  L+
Sbjct: 371 VDKVRRLSLSEQELDRTCSSNSQDVVRFTQRNLL 404


>At5g61090.1 68418.m07665 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains similarity to vegetative cell wall protein gp1
           [Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
           common family members: At4g18570, At3g25690, At4g04980
           [Arabidopsis thaliana]
          Length = 344

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 467 STVATSPSQETVATIGARPRR*KLH--AANPTSNGNPSSYLEVRRXIMIEEMTAILNG 634
           S++  SP Q    +I   P R KL   ++NP + GNP+      + +  EE   + +G
Sbjct: 16  SSITMSPGQLPSDSIKVVPGRSKLRVESSNPVARGNPTPRASKVKLLSPEEAMKLTSG 73


>At5g42770.1 68418.m05209 Maf family protein contains Pfam domain
           PF02545: Maf-like protein
          Length = 233

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 44  NIQKLLPTQXSRDLAEAIHSYVQKKLRNQKCDDEKELRVV 163
           +I+K  P +    LAEA    +  KL+  +C+DE++ RV+
Sbjct: 41  SIRKEKPEELVLALAEAKADAIVSKLQISECEDEEQPRVL 80


>At5g37310.1 68418.m04481 endomembrane protein 70, putative
           multispanning membrane protein, Homo sapiens,
           EMBL:HSU94831
          Length = 564

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 99  WIASARSLLSCVGNSFWILLYSIWVT 22
           W+ASA    SC G S  +L +S++VT
Sbjct: 529 WLASATDSSSCSGQSDSVLPFSLFVT 554


>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +2

Query: 2   VPEKILEVTQILYSNIQKLLPTQXSRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKL 175
           + EK+ E TQ+L S + K L  +  R +AE      ++++  +    ++EL ++ ++L
Sbjct: 449 IKEKVNERTQLLKSELDKKL--EECRRMAEEFVEMERRRMEERIVQQQEELEMMRRRL 504


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,221
Number of Sequences: 28952
Number of extensions: 256846
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)