Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0467
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    24   0.99 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   6.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.9  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 273 EYAYQLWMQGSEDIVRDCFPVEFTLILAENYVKLMYXRDGLAFTLSD 413
           +Y  Q+W  GS+  VR+     + +IL+ NY   +Y   G A  ++D
Sbjct: 440 KYIIQIWTTGSDPQVRNLLDNGYRVILS-NY-DALYFDCGFAGWVTD 484


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 222 ELTLVIGVD*FASFNSRVVISN 157
           EL   IGV  F SF+  V +SN
Sbjct: 44  ELIKQIGVKEFDSFHDHVSVSN 65


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 271 WSTPTSSGCKAPRTSSGIVS 330
           W TPTSS         G++S
Sbjct: 7   WDTPTSSAPAFSEQRGGVIS 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,172
Number of Sequences: 336
Number of extensions: 2653
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)