Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0467
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.35 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   7.5  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   7.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   9.9  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
 Frame = +1

Query: 274  STPTSSGCKAPRTSSGIVSRLSSHLS*LKTMLSLCTXETVSLLH*ATMAGLPTGTAKTXP 453
            STP S+    P + S   SRLSS L+      S+   ET      +     PTG++    
Sbjct: 730  STPLSNSSAYPSSGSSTFSRLSSTLT-----SSIIPTETFGSTSGSATGTRPTGSSSQGS 784

Query: 454  V--QESAGNSFR---CGRTTSLLQIENTERXQNLALXVRTNRMATTXLTG 588
            V    S G+S      G TT + ++  T   +   +   T    T   TG
Sbjct: 785  VVPTTSTGSSVTSTGTGTTTGVTEVTETSTFETTEIITSTIEPTTASGTG 834


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 344 CELNRETIPDDVLGALHPELVGVLHAVH 261
           C L R+ +P + +G+ HP ++ ++   H
Sbjct: 146 CPLCRKEVPHETVGSAHPPILFIIPHSH 173


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +1

Query: 160 ADYDSAVERSKLIYTDNKGELITNVVNNLIRKTR*TAWSTPTSSGCKAPRTSSGIVSR 333
           A  +S+   S L+  +N+G  +   +  L+ +++   W+   S   +A R  S  +S+
Sbjct: 39  ASSNSSSSSSLLLPDENEGNEVFGSLKGLVTQSKFGQWANKLSKSLQARRRKSESISK 96


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 73  CLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSK 192
           C  A   YAD      +  +E L +D+ I D+D+  E  K
Sbjct: 533 CTIAGVAYADVIPEDRQFTSEDLDSDMYIYDFDTLKENLK 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,813
Number of Sequences: 5004
Number of extensions: 43900
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)