Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0467
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475...    29   4.5  
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13...    29   4.5  
02_01_0668 - 4969141-4970520,4970597-4971463                           28   5.9  

>11_01_0596 +
           4755453-4755490,4755675-4756047,4757739-4758940,
           4759026-4759392
          Length = 659

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 330 GNNPGRCPRSLASRAGRRTPCSSSCFSYQIVYD 232
           G +P     SLA+R GR TPC +    Y+ ++D
Sbjct: 413 GRSPSLNCASLATRLGRITPCRAQIEWYKALFD 445


>05_01_0019 -
           129767-129931,130078-130257,130491-130728,130833-131236,
           131284-131427,131709-131995,132071-132150,132563-132714,
           132793-132909,133292-133450,133546-133946,134106-134423,
           135050-135095,135203-135310
          Length = 932

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 214 GELITNVVNNLIRKTR*TAWSTPTSSGCKAPRTSSGIVS 330
           GE++TN ++ L   TR TA+  PT++    P    G+ S
Sbjct: 109 GEILTNPISRLGLSTRETAFVEPTTADQHVPGYGKGLSS 147


>02_01_0668 - 4969141-4970520,4970597-4971463
          Length = 748

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 418 AGLPTGTAKTXPVQESAGNSFRCGRTTSLLQIENTERXQNLALXVRTNRM 567
           AGL  GT  +  +   A   + CGR  +  QI NTE  Q   + + T R+
Sbjct: 403 AGLGLGTPMSLMICTWALELWYCGRLVADHQITNTELFQTFYILINTCRV 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,389,171
Number of Sequences: 37544
Number of extensions: 301325
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)