Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0466
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   2.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.7  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -3

Query: 248 LYVQLFFYQSLYEQRVRVHLGPSEESSFVAAY 153
           L V+  F    YE R  +H     ESS  A Y
Sbjct: 76  LAVEAGFDWVYYESRAHIHCSVKSESSQAAKY 107


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 304 DSKWTESIKEHVKLP 348
           DS WT+   EH K+P
Sbjct: 320 DSGWTKKWDEHGKVP 334


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 342 FYMFLDAFCPFRIYVVH 292
           F + L  +CPF I+ VH
Sbjct: 79  FTVHLLFYCPFIIFTVH 95



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 342 FYMFLDAFCPFRIYVVHRVF 283
           +YM L   C F I+ +H +F
Sbjct: 262 YYMHLLFCCAFIIFTMHLLF 281


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -1

Query: 247 FMSNYSFTSHSMNNGYVFIWGQARSRAS 164
           ++S+ + +     NG    WG++R  +S
Sbjct: 264 YLSSSTMSHSQFGNGLETSWGKSRDESS 291


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,934
Number of Sequences: 336
Number of extensions: 2982
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)