Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0466
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    29   0.49 
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    29   0.64 
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   2.6  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   4.5  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   6.0  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   7.9  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   7.9  

>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query: 35  FLQQSLEQNKAPKPSIATPVKSYSHEAKVNKWLAE-QSSVDTRRRSS 172
           FL ++L+ +  PK +     ++YS+EAKVN WL E Q+  +  +RSS
Sbjct: 10  FLSRTLKTS-VPKRAGLLSFRAYSNEAKVN-WLEEVQAEEEHAKRSS 54


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +2

Query: 23  ELSSFLQQSLEQNKAPKPSIATPVKSYSHEAKVNKWLAEQSSVDTRRRSSTPRLAPDEH 199
           EL S  Q S+E NK  +P      K Y  E  ++  +     ++  RR +TP+L P+EH
Sbjct: 377 ELKSIEQFSIENNKTEQPG-----KQYFGEKTLDAIV-----LNYPRRKTTPKLTPEEH 425


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 59  NKAPKPSIATPVKSYSHEAKVNKWLAEQSSVDTRRRSSTPRLAPDE 196
           ++AP+  IA+P+ + S E+  N+  + QSS+ T   S  PR   D+
Sbjct: 199 SQAPEERIASPISTSSPESLTNQSSSLQSSLQT--SSMAPRNLLDQ 242


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 71  KPSIATPVKSYSHEAKVNKWLAEQSSVDTRRRSS 172
           +P+I+T V   +  A+V+K L E+   D+ RRSS
Sbjct: 399 QPAISTSVAEGASLAQVSKPLPERLQKDSMRRSS 432


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 247 STTLKHLAQWIAENPMYD--IDSKWTESIKEHVKLPQDVRSQRHSPMQSSGSTERKKGRP 420
           S+  + L+    EN  +D  +D + TE    + K PQ+      S M+ +   E+KK   
Sbjct: 544 SSDEESLSDMEEENETFDALVDRRKTEQQVSNEKTPQETIRSTPSGMEMTFKVEKKKKSK 603

Query: 421 P 423
           P
Sbjct: 604 P 604


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 262 VSVWCFMSNYSFTSHSMNNGYVFI 191
           V+ W  + + SF S ++N+GY+++
Sbjct: 146 VAAWADIQSSSFASQTLNSGYLWM 169


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/51 (19%), Positives = 29/51 (56%)
 Frame = +2

Query: 59  NKAPKPSIATPVKSYSHEAKVNKWLAEQSSVDTRRRSSTPRLAPDEHVPVV 211
           N +P P+++    +       ++++   SSV++ R +++P  A +++ P++
Sbjct: 350 NPSPAPTLSVSGTTPGMTGSTSEYVTPVSSVNSMRETASPLNADNQYSPLL 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,204
Number of Sequences: 5004
Number of extensions: 49315
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)