Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0466
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)                   31   1.2  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.6  
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)           30   2.1  
SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)
          Length = 644

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 240 PIILLPVTL*TTGTCSSGAKRGVELRRRVSTDDCSAS 130
           P++ +P    T G CS+    G++ RRRV    C A+
Sbjct: 286 PMLFVPSAWSTWGACSASCGGGIQQRRRVCRGTCRAT 322


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 253  TLKHLAQWIAENPMYDIDSKWTESIKEHVKLPQDV 357
            TLK LA+W+  N  YD+  +  + + E   LP ++
Sbjct: 2423 TLKSLAEWLERNRAYDVAEESAKLVLEEGNLPSNL 2457


>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
          Length = 474

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/54 (40%), Positives = 25/54 (46%)
 Frame = +1

Query: 235 NWT*STTLKHLAQWIAENPMYDIDSKWTESIKEHVKLPQDVRSQRHSPMQSSGS 396
           NW  S  LKHL Q      M   D+   E I   V+LP D  S  HS   SSG+
Sbjct: 304 NW--SGLLKHLRQ------MLIADASMEEGIDWEVRLPADGISDHHSQASSSGT 349


>SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -3

Query: 257 SVVLYVQLFFYQSLYEQRVRVHLGPSEE-SSFVAAYQPMTVQLAIYLLLLRANTISPELQ 81
           S+V  V  + YQS    +  + L  S+  S++V +  P T Q+   +LL   N ++PE+ 
Sbjct: 287 SIVGKVVQYPYQSFESFKHYILLNISQRGSAWVKSLIP-TAQIQTLMLLYLYNQLTPEML 345

Query: 80  WMVLEL 63
           W ++ L
Sbjct: 346 WFIIPL 351


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 332  SLMLSVHLESMSYIGFSAIHCARCFSVVLYVQLFFYQSLYEQRVRVHLG 186
            S+ LSV L     +  S  HCA+   V+L + L     +Y  R R H G
Sbjct: 1007 SVDLSVALRVDLSVDLSVDHCAKALRVILSIALRVDLRVYLSRTRHHRG 1055


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 315 DRKHQGTCKIASRCPQSETFSYAIFWI 395
           D K+Q  C +  R P S  +S  I WI
Sbjct: 713 DLKNQDRCNVLDRVPSSTVYSIVIRWI 739


>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 315  DRKHQGTCKIASRCPQSETFSYAIFWI 395
            D K+Q  C +  R P S  +S  I WI
Sbjct: 1367 DLKNQDRCNVLDRVPSSTVYSIVIEWI 1393


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +1

Query: 250 TTLKHLAQWIAENPMYDIDSKWTESIKEHVKLPQDVRSQRHSPMQSSGS 396
           TT  H   W A    YD D KW   +  +  L    R +  S + SS S
Sbjct: 611 TTFDHYRLWCASTSDYDRDKKWGNCLGCNRPLVATSRIKSSSDIDSSHS 659


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,990
Number of Sequences: 59808
Number of extensions: 375576
Number of successful extensions: 1055
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)