Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0466
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        30   1.4  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    30   1.4  
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    30   1.4  
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    30   1.4  
AL032626-11|CAC44300.1|  140|Caenorhabditis elegans Hypothetical...    30   1.8  
AC199241-2|ABO33280.1|  221|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL032626-10|CAA21531.1|  458|Caenorhabditis elegans Hypothetical...    29   4.3  
AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical...    28   5.6  
Z46241-2|CAA86315.1|  144|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       27   9.8  
U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans GDP-4-keto-6-...    27   9.8  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    27   9.8  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    27   9.8  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    27   9.8  

>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 331 EHVKLPQDVRSQRHSPMQSSGSTERKKGRP 420
           +H+KL QD++ QR +   +S + +R K +P
Sbjct: 877 QHIKLFQDIKHQRQNSAPTSSTQKRSKSQP 906


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 331 EHVKLPQDVRSQRHSPMQSSGSTERKKGRP 420
           +H+KL QD++ QR +   +S + +R K +P
Sbjct: 841 QHIKLFQDIKHQRQNSAPTSSTQKRSKSQP 870


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 331 EHVKLPQDVRSQRHSPMQSSGSTERKKGRP 420
           +H+KL QD++ QR +   +S + +R K +P
Sbjct: 877 QHIKLFQDIKHQRQNSAPTSSTQKRSKSQP 906


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 331 EHVKLPQDVRSQRHSPMQSSGSTERKKGRP 420
           +H+KL QD++ QR +   +S + +R K +P
Sbjct: 877 QHIKLFQDIKHQRQNSAPTSSTQKRSKSQP 906


>AL032626-11|CAC44300.1|  140|Caenorhabditis elegans Hypothetical
           protein Y37D8A.12b protein.
          Length = 140

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = -3

Query: 338 TCSLMLSVHLESMSYIGFSAIHCARCFSVVLYVQLFFYQSLYEQRVRV 195
           +C+ M++VH ++  YIG+  +       V+ ++ L+FY  L +Q+ RV
Sbjct: 92  SCAYMINVHKDTPKYIGYGIL----IAFVIFHIFLYFY--LEDQKARV 133


>AC199241-2|ABO33280.1|  221|Caenorhabditis elegans Hypothetical
           protein 2RSSE.2 protein.
          Length = 221

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2   APQASSKELSSFLQQSLEQNKAPKPSIATPVKS-YSHEAKVNKWLAEQSSVDTRRRS 169
           A + SSK +  F   ++E+N  P P +  P ++     +K N   A   SV TRRRS
Sbjct: 100 AKKTSSKSVDYFGPVTIEENPKPTP-LPKPARAPLQTSSKSNISNASDDSVPTRRRS 155


>Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical
           protein C25F9.5 protein.
          Length = 707

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 292 MYDIDS-KWTESIKEHVKLPQDVRSQRHSPMQSSGSTERKKGR 417
           MYD+DS K T+S++EH  L +D+            STE K  R
Sbjct: 174 MYDVDSFKNTKSLEEHKLLVKDIEKDLEQVNLYWSSTELKMKR 216


>AL032626-10|CAA21531.1|  458|Caenorhabditis elegans Hypothetical
           protein Y37D8A.12a protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 338 TCSLMLSVHLESMSYIGFSAIHCARCFSVVLYVQL 234
           +C+ M++VH ++  YIG+  +     F + LY  L
Sbjct: 92  SCAYMINVHKDTPKYIGYGILIAFVIFHIFLYFYL 126


>AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical
           protein Y48G1C.8 protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 122 NKWLAEQSSVDTRRRSSTPRLAPDEHVPVVH----RVTGKRIIGH 244
           +KW+ +Q  +DT +  ST   AP++    +      V  + +IGH
Sbjct: 569 SKWIDDQKKIDTSQDPSTSSAAPNDEEQFIDVEDLEVVEEEVIGH 613


>Z46241-2|CAA86315.1|  144|Caenorhabditis elegans Hypothetical
           protein C38D4.1b protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -3

Query: 338 TCSLMLSVHLESMSYIGFSAIHCARCFSVVLYVQLFFYQSLYEQRVRV 195
           +C+  ++VH ++  YIG+  +       V+ ++ L+FY  L +Q+ RV
Sbjct: 96  SCAYTINVHKDTPKYIGYGIL----IAFVIFHIFLYFY--LEDQKARV 137


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +2

Query: 2    APQASSKELSSFLQQS-LEQNKAPKPSIATPVKSYSHEAK-VNKWLAEQSSVDTRRRSST 175
            +P+  S E +    +S  ++ K+P+ S A  VKS + + K   K   E+    T++ SS 
Sbjct: 1721 SPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSP 1780

Query: 176  PRLAPDE 196
             ++A DE
Sbjct: 1781 VKMADDE 1787


>U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical
           protein R01H2.5 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 287 FSAIHCARCFSVVLYVQLFFYQSLYEQRVRVHLGPSEESSFVAAY 153
           F  I C  C S  ++     Y         VHLGP  +S+F  +Y
Sbjct: 98  FDVIKCVSCLSTCIFPDKTSYPI---DETMVHLGPPHDSNFGYSY 139


>AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 287 FSAIHCARCFSVVLYVQLFFYQSLYEQRVRVHLGPSEESSFVAAY 153
           F  I C  C S  ++     Y         VHLGP  +S+F  +Y
Sbjct: 98  FDVIKCVSCLSTCIFPDKTSYPI---DETMVHLGPPHDSNFGYSY 139


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +2

Query: 2    APQASSKELSSFLQQS-LEQNKAPKPSIATPVKSYSHEAK-VNKWLAEQSSVDTRRRSST 175
            +P+  S E +    +S  ++ K+P+ S A  VKS + + K   K   E+    T++ SS 
Sbjct: 1721 SPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSP 1780

Query: 176  PRLAPDE 196
             ++A DE
Sbjct: 1781 VKMADDE 1787


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +2

Query: 2    APQASSKELSSFLQQS-LEQNKAPKPSIATPVKSYSHEAK-VNKWLAEQSSVDTRRRSST 175
            +P+  S E +    +S  ++ K+P+ S A  VKS + + K   K   E+    T++ SS 
Sbjct: 1721 SPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSP 1780

Query: 176  PRLAPDE 196
             ++A DE
Sbjct: 1781 VKMADDE 1787


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +2

Query: 2    APQASSKELSSFLQQS-LEQNKAPKPSIATPVKSYSHEAK-VNKWLAEQSSVDTRRRSST 175
            +P+  S E +    +S  ++ K+P+ S A  VKS + + K   K   E+    T++ SS 
Sbjct: 1721 SPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSP 1780

Query: 176  PRLAPDE 196
             ++A DE
Sbjct: 1781 VKMADDE 1787


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,594
Number of Sequences: 27780
Number of extensions: 282700
Number of successful extensions: 747
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)