Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0466
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    29   2.3  
At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family pr...    29   3.0  
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ...    29   3.9  
At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi...    27   9.1  

>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 272  CARCFSVVLYVQLFFYQSLYEQRVRVHLGPSEESSFVAAYQPMTVQLAIYLLLLRAN 102
            C  CFS     +   +   Y+Q    HL P   ++F A    +T +L  +  +L++N
Sbjct: 3317 CRACFSADAVTKHVEFVKEYKQDFERHLDPESTTTFPATLAELTARLKKWKNILQSN 3373


>At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 210

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +2

Query: 5   PQASSKELSSFLQQSLEQNKAPKPSIATPVKS 100
           P +SS ELSSFL+Q L +    +PS  +P KS
Sbjct: 12  PPSSSDELSSFLRQILSRTPTAQPS--SPPKS 41


>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 597

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 198 CSSGAKRGVELRRRVSTDDCSASHLFTFASCE 103
           CSS     VE  R+ S D  SA+ L  FA+C+
Sbjct: 9   CSSKTLTEVEFMRQKSEDGASATCLLEFAACD 40


>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 736

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +2

Query: 26  LSSFLQQSLEQNKAPKPSIATPVKSYSHEAKVNKWLAEQSSVD-----TRRRSSTPRLAP 190
           L  ++++ L   + P+PS  + V S   E    KW +  S+ +     T   SS+P +  
Sbjct: 75  LERYMRKYLRPRERPRPSPTSDVSSLPKEEFTGKWKSTLSTTEEGEFITTENSSSPHIVK 134

Query: 191 DE 196
            E
Sbjct: 135 AE 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,826
Number of Sequences: 28952
Number of extensions: 259378
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)