Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0465
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 2e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 102 4e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 6e-23
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 96 3e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 67 2e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 65 9e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 5e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 7e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.099
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.13
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.1
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 2.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.7
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 4.9
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 4.9
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 6.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 6.5
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 8.6
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (420), Expect = 2e-44
Identities = 78/85 (91%), Positives = 80/85 (94%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPXANREKMT 434
KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNP +NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
QI+FETFN PA YVAIQAVLSLYAS
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYAS 145
Score = 122 bits (295), Expect = 3e-29
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +1
Query: 79 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQRK 258
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQ K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 102 bits (245), Expect = 4e-23
Identities = 50/113 (44%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Frame = +3
Query: 258 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPXANREKMTQ 437
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 438 IMFETFNTPAMYVAIQAVLSLYA-SVVPRYVLDSAT-CLHTYH-YEDTISTHL 587
MFE + +YVAIQAVLSLYA + V+DS H YE + HL
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHL 174
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +1
Query: 85 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQ 252
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAE 59
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (243), Expect = 6e-23
Identities = 45/88 (51%), Positives = 57/88 (64%)
Frame = +3
Query: 270 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPXANREKMTQIMFE 449
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 450 TFNTPAMYVAIQAVLSLYASVVPRYVLD 533
+FN +Y+A+QAVL+L AS V D
Sbjct: 149 SFNCAGLYIAVQAVLALAASWTSSKVTD 176
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 246
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 96.3 bits (229), Expect = 3e-21
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPXANREKMT 434
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 435 QIMFETFNTPAMYVAIQAVLSLYAS 509
+ +ET N PA+ ++Q VL+LYAS
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYAS 150
Score = 69.3 bits (162), Expect = 4e-13
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.9 bits (156), Expect = 2e-12
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +3
Query: 267 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPXANREKMTQIMF 446
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 447 ETFNTPAMYVAIQAVLSLYAS 509
E+ PA Y+A Q + +AS
Sbjct: 123 ESLRCPATYLAKQETCAAFAS 143
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 183
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.9 bits (151), Expect = 9e-12
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPXANREKMTQIMFETFNT 461
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 462 PAMYVAIQAVLSLYASVVP 518
P++ I + S Y + P
Sbjct: 145 PSVAYGIDGLFSFYHNTKP 163
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 97 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 192
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 5e-08
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = +3
Query: 291 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPXANREKMTQIMFETFNTPAM 470
+GI+ +W+ W +L+V P E+ +++TE NP + R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 471 YVAIQAVLSLYAS 509
Y+ QAV +A+
Sbjct: 134 YLTKQAVCVAFAN 146
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 82 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 252
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.9 bits (94), Expect = 7e-05
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPXANREKMTQIMFE 449
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 450 TFNTPAMYVAIQAVLSLYA 506
P +A + ++ LYA
Sbjct: 172 ECQVPGFTIAYEPLMGLYA 190
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.099
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +3
Query: 342 FYNELRVAPEEHPVLLTE--APLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASVV 515
+Y L E+HP+LLT+ A L P + ++ +I ++ NTP + + A+ L V
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
Query: 516 PRYVLDSATCLHTYH-YEDTISTH 584
D + Y +D+I +
Sbjct: 1459 NHAYNDLLIEMEDYQSLQDSIENY 1482
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.13
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -2
Query: 263 TSFLCASS----PTYESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 99
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 98 NAATSSS 78
N TS+S
Sbjct: 449 NCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 242 SPTYESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 126
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = -2
Query: 314 IPVSDDSVFDGVFEGQDTSFLCASSPTYESFCPIPTITP*WRGLPTIEGNTARGASSPAK 135
+P + +V +TSF ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 134 PALHIP 117
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 246
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 136 NRPCTYRSHCLLPTRQLP 83
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 429 MTQIMFETFNTPAMYVAIQAVLSLYASVVPRYVLDS-ATCLHTYHYEDTISTHLRWTC 599
++Q++F N PAM ++++ + ++ +P +DS L + DT L TC
Sbjct: 461 VSQLLFSNANVPAMCQRLRSLNNTKSNPLPAKSIDSLERALSSKKITDTEKNELLETC 518
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 240 TYVRVLLSHTDHHALMAGPSDDRGEYGARSIISCETGLAHTG 115
TY +LL D + + G +DR + + + + C L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 384 LLTEAPLNPXANREKMTQIMFETFN 458
+L APL+ +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 295 PCSMGYLRVRIPLFSVPRHLRTSPSVPYRP 206
P + Y PL +VP L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -3
Query: 223 SVPYRPSRPDGGAFR 179
SVPY PS+P+GGA++
Sbjct: 87 SVPY-PSKPNGGAYQ 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,713
Number of Sequences: 5004
Number of extensions: 55582
Number of successful extensions: 176
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -