Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0464
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0181 - 27262425-27263337,27263452-27263633                       31   0.73 
12_01_0712 - 6166757-6166904,6167551-6167576                           29   2.9  
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095     29   2.9  

>01_06_0181 - 27262425-27263337,27263452-27263633
          Length = 364

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 200 RRIRHXQGASWRDHDVRQQQLLARMRL---ERLSHKMCDVKPMMWNEPLETGYWPKIRLP 370
           R  R   G      DV   +LL R R     RL     DV P    E +ETG+ P +   
Sbjct: 12  RAPRRLDGGGGGSMDVHPSELLPRSRCTAPRRLDDDEMDVHPSE-QELIETGFAPAVARS 70

Query: 371 SGDE 382
           SGDE
Sbjct: 71  SGDE 74


>12_01_0712 - 6166757-6166904,6167551-6167576
          Length = 57

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 470 REGILTGKSSVVTHCYKPEEVXDIENLAVW--SRWLEIV 580
           R+  +T +     H +KP+     +N  +W  SRWL+IV
Sbjct: 17  RQLFMTDERKFAIHLFKPKRQIRHQNSVIWSPSRWLDIV 55


>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
          Length = 597

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 194 DRRRIRHXQGASWRDHDVRQQQLLARMRLERLSHKMCDVKPMMWNEPLETGYWPKIRLPS 373
           +R R+R    A  +   +++QQ+ A  R   L+HK   ++   W + +      + R P 
Sbjct: 279 ERERVRRQVAALLQQRMLKRQQMSALSRERALAHKRFVLQQRQWRQQMVEQQQQQQRAPM 338

Query: 374 GDE-MPVRQ 397
             + MPV Q
Sbjct: 339 QQQRMPVVQ 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,413,046
Number of Sequences: 37544
Number of extensions: 355863
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)