Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0464
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)                       29   3.0  
SB_50369| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              28   6.9  
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   28   6.9  

>SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)
          Length = 162

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 324 GTSP*RPVTGLKSVFPAVMKCPSARTTWSLPRK 422
           G  P + + GLK   P   KCPS+R T SLP K
Sbjct: 14  GAEPSKNLPGLKPS-PKKRKCPSSRRTVSLPPK 45


>SB_50369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 191 DDRRRIRHXQGASWRDHDVRQQQLLARMRLERLSHKMCDVK 313
           +DR+ ++   G + +D ++  Q  +A +     +HKMC+ K
Sbjct: 352 EDRQTVKQTVGQTTKDTNIHVQAWVANVSRFSSAHKMCEYK 392


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = +2

Query: 98   LFIPKRCYVLFHGGRRXXXXXXXXXXXXSVLDDRRRIRHXQGASWRDHDVRQQQLLARMR 277
            L +  R  ++ H  R              +LD  +R+   Q  SWR  D+  QQL +   
Sbjct: 3046 LVVQMRSQIVSHAARYQQFDFVLEDLLQWLLDMEKRLTSMQPVSWRLEDLVTQQLAS--- 3102

Query: 278  LERLSHKMCDVKPMMWN 328
             ++L+ +  + KP++ N
Sbjct: 3103 -QKLNDEFQEHKPIIEN 3118


>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 3   KAAKDPVLWKYYGITV-TDDNLVVID 77
           +  KD  LW+ +G+TV  DDN++V D
Sbjct: 340 RGGKDGELWQPHGVTVDKDDNILVCD 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,830,657
Number of Sequences: 59808
Number of extensions: 392795
Number of successful extensions: 851
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)