Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0464
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr...    31   0.61 
At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein ...    28   5.7  
At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containi...    28   7.5  
At3g16290.1 68416.m02056 FtsH protease, putative contains simila...    27   9.9  
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil...    27   9.9  
At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768...    27   9.9  

>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
           pyrophosphatase family protein similar to SP|P22413
           Ectonucleotide pyrophosphatase/phosphodiesterase 1
           (Plasma-cell membrane glycoprotein PC-1) [Includes:
           Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
           pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
           Pfam profile PF01663: Type I phosphodiesterase /
           nucleotide pyrophosphatase
          Length = 461

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 23/93 (24%), Positives = 45/93 (48%)
 Frame = +2

Query: 281 ERLSHKMCDVKPMMWNEPLETGYWPKIRLPSGDEMPVRQNNMVVATKDNLKMKQMMDDVE 460
           + L  ++ D+  + ++EP ++G+      P       R + M+      LK +++ D+V 
Sbjct: 203 DHLEDEVPDLLMLYFDEPDQSGHNYGPDDPRVTTAVSRVDKMIGRVIKGLKQREIFDEVH 262

Query: 461 MMIREGILTGKSSVVTHCYKPEEVXDIENLAVW 559
           +     IL G   +VT+C   E+   I++LA W
Sbjct: 263 V-----ILLGDHGMVTNCECNEKAIYIDDLADW 290


>At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein
           contains DHHC zinc finger domain PF01529
          Length = 307

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 21  VLWKYYGITVTDDNLVVIDWRKGVRRSLSQNDVMS 125
           +LW Y+ +  TD  +V  +WR        ++D ++
Sbjct: 74  LLWSYFSVVFTDPGVVPPNWRPSTDEERGESDPLN 108


>At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 899

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +2

Query: 482 LTGKSSVVTHCYKPEEVXDIENLAVWSRWLEI----VGDDVSYPLXNL 613
           LTG +   T C  P  V + + L  W  W +I    VG D+     NL
Sbjct: 136 LTGSTEGSTKCSLPLRVSESKELVEWENWAKIQLMSVGSDLLGKFSNL 183


>At3g16290.1 68416.m02056 FtsH protease, putative contains
           similarity to cell division protein FtsH GI:1652085 from
           [Synechocystis sp. PCC 6803]
          Length = 876

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 518 KPEEVXDIENLAVWSRWLEIVGDDVSY 598
           KP+E   +E L  WS+ L +V + + Y
Sbjct: 92  KPQEALTLEQLKAWSKDLPVVSNRIPY 118


>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
           2 (VLN2) [Arabidopsis thaliana] GI:3415115
          Length = 976

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 581 QQFLATETRRRGFQCXQLLQAYNSASRRSTFQ*GYPLG 468
           ++FLA+E R +     +++Q Y S S +S F   +P G
Sbjct: 309 EEFLASENRPKATHVTRVIQGYESHSFKSNFD-SWPSG 345


>At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768
           Esterase D (EC 3.1.1.1) {Homo sapiens}; contains Pfam
           profile: PF00756 putative esterase
          Length = 284

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 12  KDPVLWKYYGITVTDDNLVVIDWRKGVRRSLSQNDV 119
           K PVL+   G+T TD+N ++   + G +R+ S + +
Sbjct: 47  KSPVLYWLSGLTCTDENFII---KSGAQRAASTHGI 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,345,227
Number of Sequences: 28952
Number of extensions: 271526
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)