Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0463
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    29   0.60 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   1.4  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   5.6  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   5.6  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   9.7  

>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 135 LRANPYSEVTDPICRLPLPTNSID*RLFTLETCCGYGYEPARHL 4
           L +     +  P    P   +S+D R+F LE+  GY  EP   L
Sbjct: 144 LNSKTSESLKSPTLSYPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 164 SGCXRCRVWSMFVRYVXFSEXVF*YNAASKMYIF 265
           +GC +  VW  +VR+V F E    +     +Y++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 361  RHDLRLG-RSAEGRRTRVRIQSET*DXXRECHIKYIHF*GRIILKYXLAKXNITHE 197
            + D +LG + A   + +V + S+  D  +E H+KY+    +  L+  LAK +I  E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 384 HDSVRXPFNGQLRTGTDKGN 443
           HD V+  F GQ+    DKGN
Sbjct: 61  HDGVKIEFIGQIENTYDKGN 80


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 128 PILIPKLRIQFADFPYLQILSTRGSSPWRPAA 33
           P ++PKL+  + D   L I S +   P +P+A
Sbjct: 100 PSVVPKLKALYQDNYSLVIFSNQNGIPRKPSA 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,660
Number of Sequences: 5004
Number of extensions: 39222
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)