Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0463
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81543-2|CAB04424.1|  309|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81543-2|CAB04424.1|  309|Caenorhabditis elegans Hypothetical
           protein F49B2.2 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 137 SSEPILIPKLRIQFADFPYLQILSTRGSSPW 45
           +++P+L+P L I++ D  Y+Q L  R +  W
Sbjct: 79  ANQPVLLPILGIRYPDGQYMQSLDMRRTVRW 109


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 228 YFNIMRPQK--CIYLI*HSRXSSYVSDWIRTR 317
           Y   MRP    C Y I  SR S  VSDW+ +R
Sbjct: 550 YVAAMRPDGYGCFYRIGKSRISVAVSDWVSSR 581


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 185 PGTGXIRFPSKPDTPRSSEPILIPKLRI 102
           P    ++  SKP TP  + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,929
Number of Sequences: 27780
Number of extensions: 231598
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)