Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0461
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ...    49   4e-06
At2g25110.1 68415.m03004 MIR domain-containing protein similar t...    31   0.62 
At3g32270.1 68416.m04114 hypothetical protein similar to putativ...    29   2.5  
At5g02050.1 68418.m00126 mitochondrial glycoprotein family prote...    29   3.3  
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu...    29   3.3  
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa...    29   3.3  
At1g19430.1 68414.m02421 dehydration-responsive protein-related ...    29   3.3  
At4g04635.1 68417.m00678 hypothetical protein                          29   4.4  
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai...    29   4.4  
At1g70110.1 68414.m08068 lectin protein kinase family protein co...    28   5.8  
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative...    28   7.7  
At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin; gl...    28   7.7  
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si...    28   7.7  

>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
           alpha-glucosidase GI:2648032 from [Solanum tuberosum]
          Length = 921

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = +1

Query: 274 NGEVAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDD-----EEGTWSETFQSHHDSK 438
           +G  AVV ++  ++ V      R +V   +  G    +      E   W E F++H DS+
Sbjct: 148 DGYEAVVRHDPFEVYVREKSGDRRRVVSLNSHGLFDFEQLGRKTEGDNWEEKFRTHTDSR 207

Query: 439 PRGNEAVSLDVVFPDADHVYGIP 507
           P G +++S DV F D+  VYGIP
Sbjct: 208 PSGPQSISFDVSFYDSSFVYGIP 230


>At2g25110.1 68415.m03004 MIR domain-containing protein similar to
           SP|Q99470 Stromal cell-derived factor 2 precursor
           (SDF-2) {Homo sapiens}; contains Pfam profile PF02815:
           MIR domain
          Length = 218

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
 Frame = +1

Query: 292 VLNENSQLLVEPLRARREKVEDEDGDGANQLDDEEGTWSETFQSHHDSKPRGNEAVSL-- 465
           V++ NS  +V+P+    EK  D    GA        T        H S   GN  VS   
Sbjct: 76  VVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFG 135

Query: 466 -DVVFPDADH-VYGIPGTRTVWPEDDHVRRPYSCTTGRLRIH 585
            D      DH    I G+   W +D  VR  +  T+G L  H
Sbjct: 136 DDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSH 177


>At3g32270.1 68416.m04114 hypothetical protein similar to putative
           replication protein A1 GB:AAC95163 GI:4006821 from
           [Arabidopsis thaliana]
          Length = 209

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 280 LHSGPRIRVQRFGCYDDFMPLRVDENNFSIVF 185
           + +G  I + RFG Y +  P+RV  + F I F
Sbjct: 66  IDAGDWITIMRFGVYPNLNPVRVTSHKFKICF 97


>At5g02050.1 68418.m00126 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SUAPRGA1
           [Emericella nidulans] GI:6562379; contains Pfam profile
           PF02330: Mitochondrial glycoprotein
          Length = 267

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = +1

Query: 250 FELEFLDQNGEVAVVL-----NENSQLLVEPLRARREKVEDEDGDGANQLDDEE 396
           F  E +D +GE  V+L     +E  Q+ V+ + +  ++ E+E+ +  N+ DDE+
Sbjct: 103 FPFEIIDNSGERTVLLTRKFEDETIQVEVDSVASYDDEDEEEEAEPNNEEDDED 156


>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
           putative strong similarity to cytosine-5
           methyltransferase (METII) [Arabidopsis thaliana]
           GI:6523846; contains Pfam profiles PF01426: BAH domain,
           PF00145: C-5 cytosine-specific DNA methylase
          Length = 1512

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 343 EKVEDEDGDGANQLDDEEGTWSETFQSHHDSKPRGN 450
           E++E+++ +  N+ DD E    E  +SH   K RGN
Sbjct: 641 EEIEEDEEEDENEEDDIEEEAVEVQKSHTPKKSRGN 676


>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 360

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
 Frame = +1

Query: 289 VVLNENSQLLVEPLRARREKVEDE----DGDGANQLDDEEGTWSETFQSHHDSKPRGNEA 456
           V   E  Q+      A +E  E E     G      DDEE    ET +    S     + 
Sbjct: 199 VTFVEERQMSAREAVAAQEAAEAEAAAAGGSEDEDDDDEEDDSGETEEMKSSSASEPKQT 258

Query: 457 VSLDVVFPDADHVYGIPGTRTVWPEDD 537
           +SL  +  + D   G+ G+R    ED+
Sbjct: 259 MSLMDLLEETDRQMGLTGSRYAMDEDE 285


>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
           similarity to early-responsive to dehydration stress
           ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 724

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 343 EKVEDEDGDGANQLDDEEGTWSETFQSHHDSKPRGN 450
           E+ E +D D +N+ D EEGT S+  +   D    G+
Sbjct: 143 EEAESDDSDQSNKEDGEEGTESDGNEGESDGNGDGS 178


>At4g04635.1 68417.m00678 hypothetical protein
          Length = 284

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 343 EKVEDEDGDGANQLDDEEGTWSETFQSHHDSKPRGNEAV 459
           E+ E+E+G+G  + ++EE    E  + H   KP G+ A+
Sbjct: 228 EEGEEEEGEGEEEEEEEEEGEEEEGEEHVAYKPIGDRAM 266


>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
           aminoacyl-transfer RNA synthetases class-II signature 1,
           PROSITE:PS00179
          Length = 766

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 322 EPLRARREKVEDEDGDGANQLDDEEGTWSETFQSHHDSKPRGNEAVSLDVVFPDAD 489
           E L+ R++K      +G  +  DEE  W E    + + +    E  SL     D+D
Sbjct: 546 EYLKKRKQKKLSSGSEGDEEKGDEEYKWDEDNAEYEEEEEEEEEEDSLSASEEDSD 601


>At1g70110.1 68414.m08068 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 666

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 282 FSILVQEFEFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSN 142
           FSI      + G  +   +CP      TFP+++   FN S  G P N
Sbjct: 86  FSIEFHNGIYGGYGIAFVICPTRDLSPTFPTTYLGLFNRSNMGDPKN 132


>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
           strong similarity to gi:4467359
          Length = 1116

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 352 EDEDGDGANQLDDEE--GTWSETFQSHHDSKPRGNEAVSLD-VVFPD 483
           ++ED   +N +DDEE  G   + F+   D K  GNE    D  V+ D
Sbjct: 365 KNEDDKVSNAVDDEEKDGFLKKLFKEKFDEKRNGNERNETDETVYTD 411


>At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin;
           glycine-rich protein 17 (GRP17) PMID:11431566; function:
           pollen recognition (PMID:10655594)
          Length = 543

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 362 TVMGLISWMMRKELGVRP 415
           T +GLI W++++ +GV+P
Sbjct: 130 TALGLIMWLVKRRMGVKP 147


>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase, Zea mays,
           PIR2:JQ1329; contains non-consensus (GC) donor splice
           site at intron 4
          Length = 1050

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +1

Query: 328 LRARREKVEDEDGDGANQLDDEEGTWSETFQSHHDSKPRGNEAVSLDVVFPDADHVYGIP 507
           +R  + ++E E G    + +D     SE  +  +D +   +E V+   + P  DH+  I 
Sbjct: 123 VRLSKRRIEREQGRNDAE-EDLLSELSEGEKDKNDGEKEKSEVVT--TLEPPRDHMPRIR 179

Query: 508 GTRTVWPEDDHVRR 549
               +W EDD   R
Sbjct: 180 SEMQIWSEDDKSSR 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,127
Number of Sequences: 28952
Number of extensions: 352242
Number of successful extensions: 1291
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)