Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0458
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   4.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   6.0  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 404 KVCKNFCYYGYPEYRRQY*FIMNY*SFNDGGPGYLKPKQETVVPASEGRSG--SLDTLC 234
           ++ K+F      + R++    M Y    DG PGY K K   VVP   G     S +T+C
Sbjct: 622 QLSKHFSDQNEMQIRQRLKEFMEYKKKGDG-PGYWKLKSNEVVPDEAGTRSMVSPETVC 679


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 181  VISKGQWFSFLTKTKLQLHSVSKLPDLPSLAGTTVSCFGF 300
            V+S  +    LT     +H+  KL  LPSL     +C GF
Sbjct: 1401 VVSAFRVVVLLTSASEMIHTFVKLSGLPSLFKAMRACSGF 1440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,970
Number of Sequences: 5004
Number of extensions: 62047
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)