Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0458
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0757 - 5622522-5622783,5622803-5622924                           31   0.89 
02_01_0428 - 3127098-3129254                                           30   2.1  
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    30   2.1  
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178           28   8.3  

>02_01_0757 - 5622522-5622783,5622803-5622924
          Length = 127

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
 Frame = +3

Query: 288 LFRFQISRTPIIETLIIHNKSILATIFRVPVIAKILTDF-----ECHWFRGVESRR*RPT 452
           L+R  ISR  +   ++++   ILAT+F +   AK  + +       H +    S   +  
Sbjct: 39  LYRHMISRNHVTGVVLLY---ILATLFILAWAAKARSQWLRARKSQHTYVDSGSDVSKRR 95

Query: 453 NSLTSTINSMESCRMSYLMPVRVIVL 530
            +  +TI+ +E C M  LMP+  +V+
Sbjct: 96  RARRATIDGLEDCMMGILMPISTVVV 121


>02_01_0428 - 3127098-3129254
          Length = 718

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 467 HNKQYGILPDELFNACSCD 523
           HN  +G LPDELFNA S +
Sbjct: 225 HNNFHGALPDELFNASSLE 243


>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
            3110157-3111444
          Length = 1821

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 467  HNKQYGILPDELFNACSCD 523
            HN  +G LPDELFNA S +
Sbjct: 1341 HNNFHGALPDELFNASSLE 1359


>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
          Length = 1143

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 467 HNKQYGILPDELFNACSCD 523
           HN   G LPDE+FNA S +
Sbjct: 237 HNNLSGTLPDEIFNATSLE 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,426,161
Number of Sequences: 37544
Number of extensions: 378774
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)