Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0458
         (705 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC128034-1|AAI28035.1|  115|Homo sapiens H2A histone family, mem...    30   9.3  

>BC128034-1|AAI28035.1|  115|Homo sapiens H2A histone family, member
           B1 protein.
          Length = 115

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 312 TPIIETLIIHNKSILATIFRVPVIAKI 392
           TP++  +++HN  +L+T+F    I+K+
Sbjct: 84  TPLLLDMVVHNDRLLSTLFNTTTISKV 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,583,835
Number of Sequences: 237096
Number of extensions: 2154206
Number of successful extensions: 5628
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5622
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)