Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0458
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U28991-11|AAK68308.1|  314|Caenorhabditis elegans Hypothetical p...    27   9.9  

>U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical
           protein SSSD1.1 protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 639 VTGTLFDWSCGFYIWRICYNVN 704
           V G LF ++CG + WR  +N N
Sbjct: 495 VFGLLFCFACGLFAWRCFHNKN 516


>U28991-11|AAK68308.1|  314|Caenorhabditis elegans Hypothetical
           protein F08F8.4 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 273 WHHSFLFRFQISRTPIIETLIIHNK 347
           +H+++ FRF+ISRT +   L  HN+
Sbjct: 122 FHNAWRFRFEISRTFVPNFLNFHNR 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,326
Number of Sequences: 27780
Number of extensions: 344415
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)