Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0456
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...   104   1e-23
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   102   6e-23
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    40   3e-04
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    32   0.090
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    27   2.6  

>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  104 bits (249), Expect = 1e-23
 Identities = 47/86 (54%), Positives = 57/86 (66%)
 Frame = +1

Query: 250 GRGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXX 429
           G  +PLSIE+I+V PPKA EVRVK+  + VCHTDAYTLSG DPEG FP+VL         
Sbjct: 17  GAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEGAFPIVLGHEGAGIVE 76

Query: 430 XXXXXXTSVKPGDHVVPLYVPQCNTC 507
                  +V+PGDHV+ LY P+C  C
Sbjct: 77  SIGEGVINVRPGDHVILLYTPECKEC 102



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 203 MSTVGKVIKCLAAVAW 250
           MS  GK I C AAVAW
Sbjct: 1   MSFEGKTITCKAAVAW 16


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  102 bits (244), Expect = 6e-23
 Identities = 45/82 (54%), Positives = 56/82 (68%)
 Frame = +1

Query: 262 PLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXX 441
           PLSIE ++V PP+  EVR+KI  +GVCHTDAYTLSGKDPEG+FPV+L             
Sbjct: 24  PLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGP 83

Query: 442 XXTSVKPGDHVVPLYVPQCNTC 507
             T+V+ GD V+ LY P+C TC
Sbjct: 84  QVTTVQVGDPVIALYTPECKTC 105



 Score = 29.5 bits (63), Expect = 0.48
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 209 TVGKVIKCLAAVAWEEAS 262
           T GK+I C AAVAW+ A+
Sbjct: 6   TAGKIINCKAAVAWQPAA 23


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = +1

Query: 250 GRGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPVVLXXXXXXXX 426
           G  + +  EE+ V  P   EV V I  TGVCHTD + L G  P     P++         
Sbjct: 16  GGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVV 75

Query: 427 XXXXXXXTSVKPGDHV-VPLYVPQCNTC 507
                  T +K GD V V      C  C
Sbjct: 76  VKVGAGVTRLKIGDRVGVKWMNSSCGNC 103


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 265 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 402
           + I+ + +  PK GE+ VKI A  +  +D    +G  P  V+P ++
Sbjct: 23  IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIV 68


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 99  ICLIGF*YFVTS--SSKRFIARL*FQHFVIGSCPVQSCQQ 212
           + L+ F  +V S  S + F+  L FQH    S P +SC Q
Sbjct: 175 LALLNFDIYVISLPSVESFLTPLIFQHVFFKSLPSESCDQ 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,122
Number of Sequences: 5004
Number of extensions: 50973
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)