Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0456
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   4e-18
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     28   6.2  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               28   8.3  

>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 43/68 (63%), Positives = 46/68 (67%)
 Frame = +1

Query: 259 KPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXX 438
           KPLSIE IEV PPKA EVR+KI ATGVCHTDAYTLSG DPEG+FP +L            
Sbjct: 14  KPLSIETIEVAPPKAHEVRIKILATGVCHTDAYTLSGVDPEGLFPCILGHEGGGIVESVG 73

Query: 439 XXXTSVKP 462
              T VKP
Sbjct: 74  EGVTKVKP 81


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 22/69 (31%), Positives = 28/69 (40%)
 Frame = +1

Query: 307 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLY 486
           EV VK+  +G+C  D   L G+ P     VVL                +V  GD VV   
Sbjct: 75  EVIVKVAYSGICDRDLQILEGELPAAKC-VVLGHEFSGVVSDVGSDVKNVSIGDRVVVNP 133

Query: 487 VPQCNTCNS 513
              CNTC +
Sbjct: 134 NSSCNTCKA 142


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 244  RVGRGKPLSIEEIEVDPPKAGEVRVKITA----TGVCHTDAYTLSGKDPEGVFPV 396
            R  R +PLS   +  +    GE  +++ A    TG+     Y+++G DP+G F +
Sbjct: 1261 RAPRFEPLSYSAVVREDVDIGERLLRVRAFDEDTGIYKIFKYSIAGGDPQGQFKI 1315


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 230 CLAAVAWEEASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIHSPEKILRE 385
           C   +A E   + PSRR  WT++  V  A+R     SA   R  +P   LR+
Sbjct: 318 CYRNIAIEAVEKHPSRRQNWTKEDGVG-AMRLERAMSAGRDRRQNPMASLRK 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,717,072
Number of Sequences: 59808
Number of extensions: 411066
Number of successful extensions: 943
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)