Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0456
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 109 2e-24
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 109 2e-24
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 104 7e-23
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 79 2e-15
Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical pr... 40 0.001
AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical ... 38 0.009
Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical pr... 35 0.063
Z78419-6|CAB01704.1| 487|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL132846-4|CAB60347.1| 328|Caenorhabditis elegans Hypothetical ... 28 5.5
Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z70782-3|CAA94841.1| 347|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68215-16|CAD59144.1| 458|Caenorhabditis elegans Hypothetical p... 27 9.6
Z68160-5|CAA92293.2| 458|Caenorhabditis elegans Hypothetical pr... 27 9.6
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 27 9.6
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 109 bits (262), Expect = 2e-24
Identities = 52/82 (63%), Positives = 54/82 (65%)
Frame = +1
Query: 262 PLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXX 441
PLSIE I+V PPKA EVRVKI T VCHTDAYTL G DPEG+FPVVL
Sbjct: 22 PLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGE 81
Query: 442 XXTSVKPGDHVVPLYVPQCNTC 507
T PGDHVVPLYVPQC C
Sbjct: 82 GVTGFAPGDHVVPLYVPQCKEC 103
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 489 PTVQHM*FCLNPKTNLCQK 545
P + +C NPKTNLCQK
Sbjct: 98 PQCKECEYCKNPKTNLCQK 116
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 206 STVGKVIKCLAAVAW 250
ST G+VI C AAVAW
Sbjct: 3 STAGQVINCKAAVAW 17
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 109 bits (262), Expect = 2e-24
Identities = 52/82 (63%), Positives = 54/82 (65%)
Frame = +1
Query: 262 PLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXX 441
PLSIE I+V PPKA EVRVKI T VCHTDAYTL G DPEG+FPVVL
Sbjct: 22 PLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGE 81
Query: 442 XXTSVKPGDHVVPLYVPQCNTC 507
T PGDHVVPLYVPQC C
Sbjct: 82 GVTGFAPGDHVVPLYVPQCKEC 103
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 489 PTVQHM*FCLNPKTNLCQK 545
P + +C NPKTNLCQK
Sbjct: 98 PQCKECEYCKNPKTNLCQK 116
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 206 STVGKVIKCLAAVAW 250
ST G+VI C AAVAW
Sbjct: 3 STAGQVINCKAAVAW 17
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 104 bits (249), Expect = 7e-23
Identities = 52/84 (61%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 PLSIEEIEVDPPKAGEVRVK--ITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXX 435
PLSIE I+V PPKA EVRVK I T VCHTDAYTL G DPEG+FPVVL
Sbjct: 22 PLSIETIQVAPPKAHEVRVKFQILYTAVCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESV 81
Query: 436 XXXXTSVKPGDHVVPLYVPQCNTC 507
T PGDHVVPLYVPQC C
Sbjct: 82 GEGVTGFAPGDHVVPLYVPQCKEC 105
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 489 PTVQHM*FCLNPKTNLCQK 545
P + +C NPKTNLCQK
Sbjct: 100 PQCKECEYCKNPKTNLCQK 118
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 206 STVGKVIKCLAAVAW 250
ST G+VI C AAVAW
Sbjct: 3 STAGQVINCKAAVAW 17
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/62 (58%), Positives = 37/62 (59%)
Frame = +1
Query: 322 ITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCN 501
I T VCHTDAYTL G DPEG+FPVVL T PGDHVVPLYVPQC
Sbjct: 215 ILYTSVCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGKGVTGFAPGDHVVPLYVPQCK 274
Query: 502 TC 507
C
Sbjct: 275 EC 276
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 489 PTVQHM*FCLNPKTNLCQK 545
P + +C NPKTN+CQK
Sbjct: 271 PQCKECEYCKNPKTNMCQK 289
>Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical
protein K12G11.4 protein.
Length = 351
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 256 GKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 369
G PL + ++ V P+ E+ VKI +G+CH+D +T G
Sbjct: 19 GGPLEVRQVSVPQPQENELLVKIEYSGICHSDLHTWEG 56
>AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical
protein D2063.1 protein.
Length = 326
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 256 GKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 369
G PL I+++ + P E+ VK+ +G+CH+D +T G
Sbjct: 19 GGPLEIKQLPIPQPNEDELLVKMEYSGICHSDVHTWLG 56
>Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical
protein K12G11.3 protein.
Length = 349
Score = 34.7 bits (76), Expect = 0.063
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 262 PLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 369
PL + ++ V P E+ VKI +G+CH+D + G
Sbjct: 20 PLEVRQVPVPSPADDEILVKIEYSGICHSDLHVWLG 55
>Z78419-6|CAB01704.1| 487|Caenorhabditis elegans Hypothetical
protein F26A3.6 protein.
Length = 487
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 262 PLSIEEIEVDPPKAGEVRVKITATGVCHTDAY 357
PL E I DP + +++T T VC DAY
Sbjct: 294 PLMAELIHYDPSSYRDFLLRVTQTSVCSVDAY 325
>AL132846-4|CAB60347.1| 328|Caenorhabditis elegans Hypothetical
protein Y43D4A.6 protein.
Length = 328
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 67 LKGQGYYLPTKFVLSDSDILLHHRVSAS 150
LK + L T+F++ D +ILLH R+ +
Sbjct: 143 LKIADFGLSTRFIVDDKEILLHERIGTT 170
>Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.6 protein.
Length = 347
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 265 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLS 366
L +E+ + P +V VKI G+C +D + L+
Sbjct: 16 LRLEQAPISKPGPRQVLVKINTVGICGSDVHFLT 49
>Z70782-3|CAA94841.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.5 protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 265 LSIEEIEVDPPKAGEVRVKITATGVCHTDAY 357
L +E++ + P +V VK+ G+C +D +
Sbjct: 16 LRLEQVPIPKPGPNQVLVKVHTVGICGSDVH 46
>Z68215-16|CAD59144.1| 458|Caenorhabditis elegans Hypothetical
protein D1046.5 protein.
Length = 458
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 173 FCDWQLSSAVMSTVGKVIKCLAAVAWEEASRCPSR 277
F W SSAV++ V I CL V ++ ++ PS+
Sbjct: 225 FLFWVFSSAVLALVYFFIMCLPLVCCQKYTKLPSK 259
>Z68160-5|CAA92293.2| 458|Caenorhabditis elegans Hypothetical
protein D1046.5 protein.
Length = 458
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 173 FCDWQLSSAVMSTVGKVIKCLAAVAWEEASRCPSR 277
F W SSAV++ V I CL V ++ ++ PS+
Sbjct: 225 FLFWVFSSAVLALVYFFIMCLPLVCCQKYTKLPSK 259
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 251 EEASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIH 361
E + C W + +C ++SRPP ++ R+H
Sbjct: 351 ESTTECDISGHVWEIETVSRCKVKSRPPPRHLVDRVH 387
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,113,966
Number of Sequences: 27780
Number of extensions: 298493
Number of successful extensions: 691
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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