Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0455
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 82 9e-17
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 66 4e-12
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 36 0.004
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 33 0.032
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 27 2.1
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 27 2.7
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch... 27 2.7
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 4.8
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 26 4.8
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 26 6.3
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 81.8 bits (193), Expect = 9e-17
Identities = 36/76 (47%), Positives = 52/76 (68%)
Frame = +2
Query: 23 MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEK 202
MA ++ G +A + +LR+Q++ ++S F L I+QVGGREDSNVY+RMK +AA +
Sbjct: 1 MALLLEGTSLARKVREELREQISSIKSVDPYFNVSLKIIQVGGREDSNVYVRMKTRAANE 60
Query: 203 IGIAAEHIRLPRDITE 250
GI+ EH+ P DITE
Sbjct: 61 AGISCEHVNFPEDITE 76
Score = 52.0 bits (119), Expect = 8e-08
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +1
Query: 256 LLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 408
LL I NE P+VHGIIVQ+PL + I+ +T+AV+P+KDVDG N
Sbjct: 79 LLLAIKGFNEDPTVHGIIVQLPLPAH--INEQIITEAVAPEKDVDGFCETN 127
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 441 FIPCTPAGCVELIKKTGVTIAGK 509
F CTP G + ++K G+ + GK
Sbjct: 140 FTACTPKGIMCILKHYGINVQGK 162
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 66.5 bits (155), Expect = 4e-12
Identities = 33/73 (45%), Positives = 48/73 (65%)
Frame = +2
Query: 26 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 205
A I++G +A ++ + ++V L++K F+P LAIVQVG REDSNVY+RMK KAA +
Sbjct: 33 ANILNGKLLARKLQRSVAEEVQALKAKDRNFKPALAIVQVGKREDSNVYVRMKEKAARLV 92
Query: 206 GIAAEHIRLPRDI 244
GI ++ P I
Sbjct: 93 GIDFKYCPFPETI 105
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1
Query: 256 LLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 408
LL ++ LN+ +VHG++VQ+PL ++ VT++++P KDVDG N
Sbjct: 110 LLHELKKLNDDHTVHGVLVQLPLPKH--LNERTVTESITPPKDVDGFGAFN 158
Score = 29.5 bits (63), Expect = 0.51
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 447 PCTPAGCVELIKKTGVTIAG 506
PCTP G +EL+K +++AG
Sbjct: 173 PCTPKGIMELLKDNKISVAG 192
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +1
Query: 268 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGL 396
I N PSV+GI++ P+ +D D + + VSPDKDV+GL
Sbjct: 85 IVEANNDPSVNGIMIYFPVFNDGQ-DQY-LQQVVSPDKDVEGL 125
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 33.5 bits (73), Expect = 0.032
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = -3
Query: 584 TVQYVSH--FTTLTPETTMRLRPSTTTFASYSDAGLLNQFHAPGRSARNESGQITYCYST 411
T Y SH TT+TP + + + TF S + SA N + + S+
Sbjct: 427 TTTYDSHTFLTTITPSPSNSISYTNNTFIPSSSIKSSIVYSVTPTSAENYTSSEAFSTSS 486
Query: 410 SLIVFKP-STSLSGETASVTR*ASIAWSE 327
SL+V P ++SL + S T+ +S++ S+
Sbjct: 487 SLVVIPPVNSSLVTSSTSFTKFSSLSSSQ 515
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 429 DLSGFIPCTPAGCVELIKKTGVTIAGKCGSARAESHRGLRCQSCEMG 569
D SG++ +E++ G+TI G G+ E+ +G ++G
Sbjct: 393 DASGYLKMGFMANLEVLTSKGLTICGMIGNGVGENKKGTNISDTQIG 439
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 578 QYVSHFTTLTPETTMRLRPSTTTFASYSD 492
+Y HF L+ E L PST T+ Y++
Sbjct: 695 EYKKHFDNLSEERRQCLTPSTPTYEYYNE 723
>SPAC14C4.08 |mug5||meiotically upregulated gene
Mug5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 110 SGFEPRLAIVQVGGRE-DSNVYIRMKLKAAEKI 205
SGFE R+ I++ E DSN+YIR+K + K+
Sbjct: 11 SGFENRIKILEDLMNEFDSNLYIRLKRECDFKL 43
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -3
Query: 533 RLRPSTTTFASYSDAGLLNQF-HAPGRSARNESGQITYCYSTSLIVFKPSTSLSGETASV 357
+ RP +T +SYS A L + APG E T+ SL + G TA V
Sbjct: 347 KFRPPGSTISSYSSASTLRRLPRAPGSKVHAERQNSTFNSGISLRALRKE---MGNTAPV 403
Query: 356 T 354
+
Sbjct: 404 S 404
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 74 LRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHI 226
L + +T+LR+ + P A V G ED N+Y+ + + +H+
Sbjct: 223 LTKLITKLRTNSISWNPMEAFNFVAGSEDHNLYMYDMRNLKRALHVYKDHV 273
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 47 EVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRM--KLKAAEK 202
E+ S++ D+RQ++ +L + S E I + RE IRM +L++AE+
Sbjct: 31 EIESSLK-DVRQELQKLNEEQSRLEKNAQIPEYRVRESEAFLIRMQRRLESAEE 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,470
Number of Sequences: 5004
Number of extensions: 51380
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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