Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0455
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 58 9e-09
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 57 2e-08
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 53 3e-07
04_01_0039 + 455760-457631 29 3.8
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 29 5.0
03_02_0816 + 11487811-11488708,11488835-11489235 29 5.0
08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084 28 8.7
07_01_0234 + 1715338-1718233,1718351-1718760 28 8.7
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 28 8.7
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 57.6 bits (133), Expect = 9e-09
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +2
Query: 23 MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEK 202
MAQII G VA I ++ V L S + P LA+V VG R+DS Y++MK KA +
Sbjct: 1 MAQIIDGKAVAADIRREVAADVAALSSAHN-LVPGLAVVIVGSRKDSQTYVQMKRKACAE 59
Query: 203 IGIAAEHIRLPRDITE 250
+GI + + L DI+E
Sbjct: 60 VGIRSVDVDLAEDISE 75
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +1
Query: 256 LLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 408
L+A++ LN P+VHGI+VQ+PL I+ ++ + +S +KDVDG + +N
Sbjct: 78 LVAEVHRLNADPAVHGILVQLPLPKH--INEEKILNEISLEKDVDGFHPLN 126
Score = 41.1 bits (92), Expect = 9e-04
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +3
Query: 441 FIPCTPAGCVELIKKTGVTIAGK 509
F+PCTP GC+EL+ ++GVTI GK
Sbjct: 139 FLPCTPKGCMELLTRSGVTINGK 161
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +2
Query: 26 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 205
A+II G VA I ++ ++ +++ G P LA++ VG R+DS Y+R K KA E +
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
Query: 206 GIAAEHIRLPRDITE 250
GI + + LP D +E
Sbjct: 139 GIKSYEVNLPEDSSE 153
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 250 NRLLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 408
+ +L I + N PSVHGI+VQ+PL H ++ + +AVS +KDVDG + +N
Sbjct: 154 DEVLKHIATFNSDPSVHGILVQLPL--PHHMNDENILNAVSIEKDVDGFHPLN 204
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 441 FIPCTPAGCVELIKKTGVTIAGK 509
F+PCTP GC+EL+ + GV I GK
Sbjct: 217 FVPCTPKGCMELLHRYGVEIKGK 239
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +2
Query: 26 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 205
A II G VA I + ++V ++++ G P LA+V VG R DS Y+R K+K E++
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNA-VGHVPGLAVVLVGDRRDSESYVRYKIKGCEEV 156
Query: 206 GIAAEHIRLPRDITE 250
GI + LP + TE
Sbjct: 157 GIKSLLAELPGNCTE 171
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 268 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 408
++ NE PSVHGI+VQ+PL +D R+ A+S +KDVDG + +N
Sbjct: 178 VSRFNEDPSVHGILVQLPLPQH--MDEERILSAISLEKDVDGFHPLN 222
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 441 FIPCTPAGCVELIKKTGVTIAGK 509
F+PC C+EL+ ++G+ + GK
Sbjct: 235 FVPCAAKACLELLLQSGIELMGK 257
>04_01_0039 + 455760-457631
Length = 623
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 268 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVS 372
++ LNE P+++G +V + DSD ++ + DAV+
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVT 502
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 217 RTYPLTKGHH*NRLLAKITSLNESPSV 297
R YPL H NRLL +L+ SPSV
Sbjct: 34 RRYPLAAHHSHNRLLPPAHALSSSPSV 60
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 550 HRRPRCDSARALPHLPAIVTPVFLISSTHPAGVQGMNPDRSPT 422
HRR CDS R P PAIV + + + P P PT
Sbjct: 114 HRRASCDSPRPTP--PAIVARLMGLEESAPPSPAATTPRPLPT 154
>08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084
Length = 380
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 118 EARPF*TQPRHLLTQVIFYRS 56
EAR F QP+H LT ++ +RS
Sbjct: 338 EARSFEPQPKHRLTNLVIFRS 358
>07_01_0234 + 1715338-1718233,1718351-1718760
Length = 1101
Score = 27.9 bits (59), Expect = 8.7
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Frame = -1
Query: 547 RRPRCDSARALPHLP--AIVTP-------VFLISSTHPAGVQGMNPDRSPTATRLR*LCL 395
RR R +A LP++P +VTP + I+ T+ G++G PD TRLR L L
Sbjct: 64 RRRRAVAALELPNIPLHGMVTPHLGNLSFLSFINLTN-TGLEGPIPDDLGRLTRLRVLDL 122
Query: 394 SRQHL 380
SR L
Sbjct: 123 SRNRL 127
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 62 IENDLRQQVT--RLRSKWSGFEPRLAIVQVGG 151
I+NDL Q++T R+ S+W G + A VGG
Sbjct: 160 IDNDLAQRLTGTRMESRWRGRRSKGASTGVGG 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,714,689
Number of Sequences: 37544
Number of extensions: 367391
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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