Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0455
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018) 55 5e-08
SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41) 31 0.96
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 28 6.7
SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072) 28 6.7
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36) 28 6.7
SB_38499| Best HMM Match : TP2 (HMM E-Value=1.5) 28 6.7
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9) 28 8.9
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) 28 8.9
SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)
Length = 101
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/52 (48%), Positives = 37/52 (71%)
Frame = +1
Query: 253 RLLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 408
++L + LN+ ++HGIIVQ+P DS++ ID T+AV P+KDVDGL+ N
Sbjct: 21 QVLKAVDELNKDSAIHGIIVQLPPDSENPIDPGICTNAVIPEKDVDGLHDEN 72
Score = 35.1 bits (77), Expect = 0.059
Identities = 15/26 (57%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +3
Query: 414 RVAVGDLSG-FIPCTPAGCVELIKKT 488
R+A G+L+ +PCTP GC+ELIKK+
Sbjct: 75 RLARGELATCIVPCTPRGCLELIKKS 100
>SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)
Length = 316
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 127 PGLEARPF*TQPRHLLTQVIFYRSCNFNPRYNLCHLSPENCL 2
P L RPF T+ R + +Q +F R + RY C L +CL
Sbjct: 21 PPLFTRPFFTRIRTIYSQPVFIRRTLMDNRYRSCLLKGFSCL 62
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 261 SKNHESERISFRSRHHCSNAP 323
+K+++S +I FR R HC N P
Sbjct: 63 TKSYQSVQIQFRKRFHCRNFP 83
>SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)
Length = 221
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 261 SKNHESERISFRSRHHCSNAP 323
+K+++S I FR R HC N P
Sbjct: 18 TKSYQSAHIQFRKRFHCRNFP 38
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 74 LRQQVTRLRSKWSGFEPRLAIVQVGGREDS 163
+RQ V + SK+ G PR AI Q+GG D+
Sbjct: 597 VRQPVNDVTSKYPG-SPRNAIAQIGGSRDA 625
>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
Length = 885
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +2
Query: 74 LRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHIRLPRDI 244
LR+ V +RS + P A + EDSN+Y + + + + +H+ D+
Sbjct: 302 LRKLVMEMRSNTIAWNPIEAYMFTAANEDSNLYTYDMRRLDQAVNVHMDHVSAVLDV 358
>SB_38499| Best HMM Match : TP2 (HMM E-Value=1.5)
Length = 421
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -3
Query: 578 QYVSHFTTLTPETTMRLRPSTTTFASYSDAGLLNQFHAPGRSARNESGQITYCYSTSLIV 399
+Y++H ++ TT + RPS T YS AP R A + Y+
Sbjct: 144 RYINHTVSIRHATTSKQRPSVTLQQLYSALPSRYNHTAPFRHATTPHSVLPSRYNNHTAP 203
Query: 398 FKPSTS 381
F+ +T+
Sbjct: 204 FRHATT 209
>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
Length = 842
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 20 KMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQ 142
K A + +G +AG I++ + +QVTR + +GF L + Q
Sbjct: 2 KKAAVAAGASIAGHIKHAIAEQVTRAK---TGFPRSLTLAQ 39
>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
Length = 1183
Score = 27.9 bits (59), Expect = 8.9
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Frame = +2
Query: 71 DLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNV--YIRMKLKAAEKI--GIAAEHIRLPR 238
DL QVT LRS+ E +++++ R D N ++R + EK + +E ++
Sbjct: 441 DLDVQVTNLRSQKIRLEAEISVMKEERRRDDNEVDHLRKEKSDLEKAMHSLRSEKTKVET 500
Query: 239 DITEIGC*QKSRV*TNLLPFTASLFKCPLIRTTRSTLIE 355
DIT + R T+ L F A + L R RS +E
Sbjct: 501 DITMAEDTWRKRNDTSELRFEADDLEKEL-RDLRSERVE 538
>SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -1
Query: 118 EARPF*TQPRHLLTQV---IFYRSCNFNPRYNLCHL 20
+ARP P L T+ + Y +C+ +P +NLC L
Sbjct: 123 DARPLLLHPNKLFTKRRGRVSYYNCSTSPSFNLCEL 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,657,798
Number of Sequences: 59808
Number of extensions: 425537
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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