Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0455
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.9  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 162 ESSRPPTCTMASLGSKPDHFER 97
           +SS  P    +S  + PDH+ER
Sbjct: 27  DSSGIPHSAESSASNSPDHYER 48


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 551 TPETTMRLRPSTTTFASYSDAGLLNQFHAPGRSARNESGQITY 423
           T ++ M + P+T   A Y +    NQ+    R  R +   I+Y
Sbjct: 80  TLKSKMEIDPATQKDAGYYECQADNQYAVDRRGFRTDYVMISY 122


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 507  KCGSARAESHRGLRCQSC 560
            + GSA   SHRG+  + C
Sbjct: 1706 RMGSAEGLSHRGMEDEIC 1723


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,350
Number of Sequences: 438
Number of extensions: 3443
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)