Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0454
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.1  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   5.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   9.5  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 356 RARGYYGPTPTDWEDQEY 409
           RA GYYGP     + QEY
Sbjct: 92  RAAGYYGP-QQQMDGQEY 108


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 605 VLSSESLVQLALVVFRTIFFRGVTXIFTTLTF 510
           VLS   +V   L+VF   F +G+T     L +
Sbjct: 128 VLSKNGIVFAGLIVFILFFAQGLTSPIFNLVY 159


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 406 IRFGCSS*SIGFFIFTDSFRRTSGA 480
           +RFGC S  + ++  TD +++   A
Sbjct: 269 LRFGCLSTRLFYYQLTDLYKKIKKA 293


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +2

Query: 47  SGCISSHHRSSFCRRTKKKDSHPLTAEGKAYSSS*EDLHN 166
           SG ++ HH            S PL+     Y+SS    H+
Sbjct: 18  SGSVAGHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHHH 57


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 582 YEXLTREDSVSFLTIYLIDGXHRNKNTDENMRAW 683
           +E +T +++  + +   ++G  +  N D ++R W
Sbjct: 217 WESVTGQNAPLYASSIDVEGSQKLLNVDASIRGW 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,633
Number of Sequences: 336
Number of extensions: 3363
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)