Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0454
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    28   1.5  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -1

Query: 467 LRKLSVNMKNPML-----HEEQPNRIPDLPSPLVWVHNSLLRDKEAKALK 333
           +R  S+ +KNP L     H      I + P+ L+  HN+LL  +EAK+L+
Sbjct: 7   VRASSIYVKNPQLRKSFLHSNYVQLIQESPNFLILQHNNLL-PREAKSLR 55


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 290 YEESPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEY-DLVAPHEASDSSYL 451
           +EE P   P  SV  ++  P      + GP P D  D  Y DL+ P E   +S L
Sbjct: 160 FEELPNFCPDMSVLDNRTHPRTLKAEWKGP-PLDLSDDPYRDLLHPAELHLASTL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,609
Number of Sequences: 5004
Number of extensions: 54630
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)