Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0454
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1691 - 35393728-35394585 31 0.86
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 31 0.86
04_03_0904 + 20717005-20718087 29 2.6
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 29 4.6
01_07_0082 - 40965947-40967023 29 4.6
12_02_1005 + 25235757-25235915,25236258-25236374,25236467-252365... 28 6.0
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 28 6.0
02_05_0460 - 29224525-29224620,29225525-29226625 28 6.0
04_04_1433 + 33564153-33564435,33564501-33564728,33564834-335654... 28 8.0
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603... 28 8.0
03_02_0869 - 11944309-11945004,11945522-11945838,11945933-11946098 28 8.0
01_07_0138 - 41383304-41384458 28 8.0
>04_04_1691 - 35393728-35394585
Length = 285
Score = 31.1 bits (67), Expect = 0.86
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 338 KLLPLYRARGYYGPTPTDWEDQEYDLVAPHEASDSS--YLPTAFAEPPGPSIVP--HNHA 505
K L YR R G TDW EY LVA H+ D S + AF +P ++ H H
Sbjct: 119 KTLVFYRGRAPNG-CKTDWIIHEYRLVAHHQQPDGSCWVVCRAFHKPTTTTLQHQLHLHR 177
Query: 506 PRKL 517
P L
Sbjct: 178 PAPL 181
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 31.1 bits (67), Expect = 0.86
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 269 PLNSVEIYEESPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEY----DLVAPHEAS 436
P S I ++ R G+ T +LP + + + P DW+D+EY D V P E
Sbjct: 186 PDASYSILVDNRERESGSMYTDWDILPPRKIKDVHAKKPKDWDDREYIEDPDAVKP-EGY 244
Query: 437 DSSYLPTAFAEP 472
DS +P +P
Sbjct: 245 DS--IPKEIPDP 254
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +2
Query: 299 SPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEYDLVAPHEASDSSYLPTAFAEPPG 478
+PT TP T P Y+ + PTPT ++ Q +P+ + PT P
Sbjct: 284 TPTPTPYTPTPKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTPTPPTYTPTPTP 343
Query: 479 P 481
P
Sbjct: 344 P 344
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 174 PSSQYAPAYMPSAKGAVAVPTNIALPA*PASYP*T 278
PS AP+Y+PS A PTN+ P+ P P T
Sbjct: 658 PSQNGAPSYIPSQASQFAAPTNLQ-PSQPTFPPQT 691
>01_07_0082 - 40965947-40967023
Length = 358
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 189 APAYMPSAKGAVAVPTNIALPA*PASYP 272
APAY PSA A A P P P +YP
Sbjct: 157 APAYPPSAAAAAAYPPQSTYPP-PTAYP 183
>12_02_1005 +
25235757-25235915,25236258-25236374,25236467-25236535,
25237509-25237964
Length = 266
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 213 WHLACMPAHTVRTGGWLCKSSYDDEYALPSA 121
W + H V GGWL + DD A P A
Sbjct: 4 WLYPIVGGHQVAAGGWLSPEAGDDRRAAPPA 34
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 269 PLNSVEIYEESPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEYDLVAPHEASDSSY 448
P S + ++ R G+ T +LP + + P DW+D+EY + P E Y
Sbjct: 186 PDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREY-IEDPDEVKPEGY 244
Query: 449 --LPTAFAEP 472
+P +P
Sbjct: 245 DSIPKEIPDP 254
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 28.3 bits (60), Expect = 6.0
Identities = 26/85 (30%), Positives = 35/85 (41%)
Frame = +2
Query: 251 CIASIVPLNSVEIYEESPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEYDLVAPHE 430
C AS + + SP+ TP T +S+L+PL A + P AP
Sbjct: 223 CPASASASAAAGLVSLSPSATP-TGANSSRLMPLLLAPPHMQKRPPVLPVSPAS--APAA 279
Query: 431 ASDSSYLPTAFAEPPGPSIVPHNHA 505
++SS PP PS PH HA
Sbjct: 280 LAESS--SEELRPPPLPSSHPHAHA 302
>04_04_1433 +
33564153-33564435,33564501-33564728,33564834-33565453,
33566938-33567195
Length = 462
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 208 LGMYAGAYCEDGWLVM 161
LG + AYC +GWL+M
Sbjct: 412 LGYWRSAYCREGWLLM 427
>03_06_0759 -
36059872-36059928,36059934-36060125,36060241-36060348,
36060440-36060712,36060923-36061009,36061085-36061276,
36061841-36061969,36062087-36062200,36062446-36062490,
36062785-36062956,36063229-36063515,36063989-36064456
Length = 707
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 344 LPLYRARGYYGPTPTDWEDQEYDLVAPHEASDSSYLPTAFAEPPGPS 484
LP AR DW D + D + AS S+ LPT P P+
Sbjct: 8 LPARPARPISFEDSPDWADDDVDSIHLATASASASLPTTAYPSPSPT 54
>03_02_0869 - 11944309-11945004,11945522-11945838,11945933-11946098
Length = 392
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 323 SVTASKLLPLYRARGYYGPTPTDWEDQEYDLVAPHEASDSSYLPTAF 463
SV K L Y+ R G T T+W EY L A + ++Y P F
Sbjct: 110 SVGVKKALVFYKGRPPKG-TKTNWIMHEYRLAAADAHAANTYRPMKF 155
>01_07_0138 - 41383304-41384458
Length = 384
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = -3
Query: 333 AVTDVPGVRVGDSSYISTEFRGTMLAMQAGRC**ALLQRPWH-------LACMPAHTVRT 175
AV+ G R G SS++ E G + C + R +H P++ +
Sbjct: 283 AVSRYDGEREGTSSWLPVEDLGEAAILVGSSCSLCVSTRGFHDDLRNRLFFAWPSY--ES 340
Query: 174 GGWLCKSSYDDEYALPSAVSGC 109
G + C + DEY LP+A GC
Sbjct: 341 GKYYC--FHPDEYRLPTATPGC 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,643,492
Number of Sequences: 37544
Number of extensions: 370309
Number of successful extensions: 1096
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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