Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0454
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 162 ITNHPSSQYAPAYMPSAKGAVAVPTN----IALPA*PASY 269
           +T HPS+  AP Y+PSA      P+     + LP+ P++Y
Sbjct: 121 LTEHPSTYRAPLYLPSAPLLTERPSTYRAPLYLPSAPSTY 160


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 245  PAC-IASIVPLNSVEIYEESPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEYDLVA 421
            P+C  A+  PLNS      +PT TP TS  +S  +    + G +  + T + D+    +A
Sbjct: 940  PSCQSATATPLNSYHSSLVNPTTTPITSYQSSSNV----SAGSHHSSLTSFTDRACSPMA 995

Query: 422  PHEASDSSYLP 454
              E S S+ +P
Sbjct: 996  VEEESQSACVP 1006


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,513,532
Number of Sequences: 59808
Number of extensions: 423826
Number of successful extensions: 968
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)