Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0454
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49128-6|CAA88957.1|  621|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    28   7.2  

>Z49128-6|CAA88957.1|  621|Caenorhabditis elegans Hypothetical
           protein M03C11.7 protein.
          Length = 621

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 315 PERQLLLQSFCLFIAQEAIMDPHQRTGKIRNTIWLLLMKHRILHIYRQLSQN 470
           PE ++ + +    +  EAI DP +   ++R  +   L KH  L+  R+L+++
Sbjct: 408 PEPKVKISNLMRVLGNEAIQDPTKMEAQVRKQMAERLKKHETLNAERKLTED 459


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 320 FRAFVSETLHISRQSLGVRCWLCRQGDVSRHCYSALGTWHVCRRIL 183
           +R F++E L  +R  LG+ C  C +      C+  +G WH  R IL
Sbjct: 240 YRTFLTEVLKHARFCLGLAC--CER------CFIHIGQWHDRRNIL 277


>U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical
           protein C16B8.2 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 401 QEYDLVAPHEASDSSYLPTAFAEPPGPSIVPHNHAPRKLK 520
           +E  L   + AS  S++     E P P+++PH   P+K+K
Sbjct: 347 KEEALEMEYPASSQSHIKKIHLEMP-PTLLPHRRKPKKMK 385


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 50  GCISSHHRSSFCRRTKKKDSHPLTAEGKAYSSS*EDLHNQPP 175
           GC  +H  ++ C     +  HP     K YS+   D   +PP
Sbjct: 85  GCTCAHTLAANCHTDLAQTQHPANLSMKTYSACYADALQRPP 126


>AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical
           protein T22B11.4a protein.
          Length = 553

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 50  GCISSHHRSSFCRRTKKKDSHPLTAEGKAYSSS*EDLHNQPP 175
           GC  +H  ++ C     +  HP     K YS+   D   +PP
Sbjct: 85  GCTCAHTLAANCHTDLAQTQHPANLSMKTYSACYADALQRPP 126


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 85
            protein.
          Length = 2203

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +3

Query: 279  LSRYMKSLRHERPERQLLLQSFCLFIAQEAIMDPHQRTGKIRNTIWLLLMKHRI----LH 446
            LS   +SLR  R +R+  LQS     ++E   D  Q    I     L +  +++    L+
Sbjct: 1958 LSGLYQSLRTNRQQRRSFLQSMVKLFSEEFSHDKPQLMEYIFIADNLAMFPYQMIDEPLY 2017

Query: 447  IYRQLSQNLRGLALYLIIMHR 509
            + RQ+ QN+      L++ ++
Sbjct: 2018 VMRQIDQNIAQTGQSLLVQYK 2038


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,717
Number of Sequences: 27780
Number of extensions: 314133
Number of successful extensions: 847
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)